Literature DB >> 15656349

Thrombin: a paradigm for enzymes allosterically activated by monovalent cations.

Enrico Di Cera1.   

Abstract

Enzymes activated by monovalent cations are abundantly represented in plants and in the animal world. The mechanism, of activation involves formation of a ternary intermediate with the enzyme-substrate complex, or binding of the cation to an allosteric site in the protein. Thrombin is a Na+-activated enzyme with procoagulant, anticoagulant and signaling roles. The binding of Na+ influences allosterically thrombin function and offers a paradigm for regulatory control of protease activity and specificity. Here we review the molecular basis of thrombin allostery as recently emerged from mutagenesis and structural studies. The role of Na+ in blood coagulation and the evolution of serine proteases are also discussed.

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Year:  2004        PMID: 15656349     DOI: 10.1016/j.crvi.2004.07.011

Source DB:  PubMed          Journal:  C R Biol        ISSN: 1631-0691            Impact factor:   1.583


  12 in total

1.  Ions and inhibitors in the binding site of HIV protease: comparison of Monte Carlo simulations and the linearized Poisson-Boltzmann theory.

Authors:  Dezso Boda; Mónika Valiskó; Douglas Henderson; Dirk Gillespie; Bob Eisenberg; Michael K Gilson
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

2.  Structure of granzyme C reveals an unusual mechanism of protease autoinhibition.

Authors:  Dion Kaiserman; Ashley M Buckle; Petra Van Damme; James A Irving; Ruby H P Law; Antony Y Matthews; Tanya Bashtannyk-Puhalovich; Chris Langendorf; Philip Thompson; Joël Vandekerckhove; Kris Gevaert; James C Whisstock; Phillip I Bird
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-19       Impact factor: 11.205

3.  Tri-arginine exosite patch of caspase-6 recruits substrates for hydrolysis.

Authors:  Derek J MacPherson; Caitlyn L Mills; Mary Jo Ondrechen; Jeanne A Hardy
Journal:  J Biol Chem       Date:  2018-11-12       Impact factor: 5.157

4.  Involvement of the Na+/H+ exchanger in membrane phosphatidylserine exposure during human platelet activation.

Authors:  Robert Bucki; Jennifer J Pastore; Françoise Giraud; Paul A Janmey; Jean-Claude Sulpice
Journal:  Biochim Biophys Acta       Date:  2006-01-17

5.  Expression of allosteric linkage between the sodium ion binding site and exosite I of thrombin during prothrombin activation.

Authors:  Heather K Kroh; Guido Tans; Gerry A F Nicolaes; Jan Rosing; Paul E Bock
Journal:  J Biol Chem       Date:  2007-04-12       Impact factor: 5.157

6.  Designing allosteric regulators of thrombin. Monosulfated benzofuran dimers selectively interact with Arg173 of exosite 2 to induce inhibition.

Authors:  May H Abdel Aziz; Preetpal Singh Sidhu; Aiye Liang; Ji Yeong Kim; Philip D Mosier; Qibing Zhou; David H Farrell; Umesh R Desai
Journal:  J Med Chem       Date:  2012-07-25       Impact factor: 7.446

7.  Computation of conformational coupling in allosteric proteins.

Authors:  Brian A Kidd; David Baker; Wendy E Thomas
Journal:  PLoS Comput Biol       Date:  2009-08-28       Impact factor: 4.475

8.  Hydration number, topological control, and ion selectivity.

Authors:  Haibo Yu; Sergei Yu Noskov; Benoît Roux
Journal:  J Phys Chem B       Date:  2009-06-25       Impact factor: 2.991

Review 9.  Exosites in the substrate specificity of blood coagulation reactions.

Authors:  P E Bock; P Panizzi; I M A Verhamme
Journal:  J Thromb Haemost       Date:  2007-07       Impact factor: 5.824

10.  Correlation analysis for protein evolutionary family based on amino acid position mutations and application in PDZ domain.

Authors:  Qi-Shi Du; Cheng-Hua Wang; Si-Ming Liao; Ri-Bo Huang
Journal:  PLoS One       Date:  2010-10-06       Impact factor: 3.240

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