Literature DB >> 15650812

Construction and characterization of a plant transformation-competent BIBAC library of the black Sigatoka-resistant banana Musa acuminata cv. Tuu Gia (AA).

E Ortiz-Vázquez1, D Kaemmer, H-B Zhang, J Muth, M Rodríguez-Mendiola, C Arias-Castro, Andrew James.   

Abstract

A plant transformation-competent binary bacterial artificial chromosome (BIBAC) library was constructed from Musa acuminata cv. Tuu Gia (AA), a black Sigatoka-resistant diploid banana. After digestion of high-molecular-weight banana DNA by HindIII, several methods of DNA size selection were tested, followed by ligation, using a vector/insert molar ratio of 4:1. The library consists of 30,700 clones stored in 80 384-well microtiter plates. The mean insert size was estimated to be 100 kb, and the frequency of inserts with internal NotI sites was 61%. The majority of insert sizes fell into the range of 100+/-20 kb, making them suitable for Agrobacterium-mediated transformation. Only 1% and 0.9% of the clones contain chloroplast and mitochondrial DNA, respectively. This is the first BIBAC library for banana, estimated to represent five times its haploid genome (600 Mbp). It was demonstrated by hybridization that the library contains typical members of resistance gene and defense gene families that can be used for transformation of disease susceptible banana cultivars for banana genetic improvement.

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Year:  2005        PMID: 15650812     DOI: 10.1007/s00122-004-1896-1

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  16 in total

1.  A bacterial artificial chromosome library of Lotus japonicus constructed in an Agrobacterium tumefaciens-transformable vector.

Authors:  A E Men; K Meksem; M A Kassem; D Lohar; J Stiller; D Lightfoot; P M Gresshoff
Journal:  Mol Plant Microbe Interact       Date:  2001-03       Impact factor: 4.171

2.  Development of new transformation-competent artificial chromosome vectors and rice genomic libraries for efficient gene cloning.

Authors:  Yao-Guang Liu; Hongmei Liu; Letian Chen; Weihua Qiu; Qunyu Zhang; Hao Wu; Chunyi Yang; Jing Su; Zhonghua Wang; Dongsheng Tian; Mantong Mei
Journal:  Gene       Date:  2002-01-09       Impact factor: 3.688

3.  Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2).

Authors:  M Luo; Y H Wang; D Frisch; T Joobeur; R A Wing; R A Dean
Journal:  Genome       Date:  2001-04       Impact factor: 2.166

4.  BIBAC and TAC clones containing potato genomic DNA fragments larger than 100 kb are not stable in Agrobacterium.

Authors:  J Song; J M Bradeen; S K Naess; J P Helgeson; J Jiang
Journal:  Theor Appl Genet       Date:  2003-07-26       Impact factor: 5.699

5.  A binary vector-based large insert library for Brassica napus and identification of clones linked to a fertility restorer locus for Ogura cytoplasmic male sterility (CMS).

Authors:  Y Wu; L Tulsieram; Q Tao; H B Zhang; S J Rothstein
Journal:  Genome       Date:  2000-02       Impact factor: 2.166

6.  Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation.

Authors:  S Yoshimura; U Yamanouchi; Y Katayose; S Toki; Z X Wang; I Kono; N Kurata; M Yano; N Iwata; T Sasaki
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

7.  A colony bank containing synthetic Col El hybrid plasmids representative of the entire E. coli genome.

Authors:  L Clarke; J Carbon
Journal:  Cell       Date:  1976-09       Impact factor: 41.582

8.  Complementation of plant mutants with large genomic DNA fragments by a transformation-competent artificial chromosome vector accelerates positional cloning.

Authors:  Y G Liu; Y Shirano; H Fukaki; Y Yanai; M Tasaka; S Tabata; D Shibata
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

9.  One large-insert plant-transformation-competent BIBAC library and three BAC libraries of Japonica rice for genome research in rice and other grasses.

Authors:  Q. Tao; A. Wang; H.-B. Zhang
Journal:  Theor Appl Genet       Date:  2002-08-22       Impact factor: 5.699

10.  Ascertaining maternal and paternal lineage within Musa by chloroplast and mitochondrial DNA RFLP analyses.

Authors:  F Carreel; D Gonzalez de Leon; P Lagoda; C Lanaud; C Jenny; J P Horry; H Tezenas du Montcel
Journal:  Genome       Date:  2002-08       Impact factor: 2.166

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  8 in total

1.  Structural and phylogenetic analysis of Pto-type disease resistance gene candidates in banana.

Authors:  Santy Peraza-Echeverria; Andrew James-Kay; Blondy Canto-Canché; Eduardo Castillo-Castro
Journal:  Mol Genet Genomics       Date:  2007-06-22       Impact factor: 3.291

2.  Transformation of rice with large maize genomic DNA fragments containing high content repetitive sequences.

Authors:  Yafei Wang; Haiyang Zeng; Xu Zhou; Fei Huang; Wei Peng; Lin Liu; Wentao Xiong; Xue Shi; Meizhong Luo
Journal:  Plant Cell Rep       Date:  2015-02-21       Impact factor: 4.570

3.  A large insert Thellungiella halophila BIBAC library for genomics and identification of stress tolerance genes.

Authors:  Weiquan Wang; Yaorong Wu; Yin Li; Jiaying Xie; Zhonghui Zhang; Zhiyong Deng; Yiyue Zhang; Cuiping Yang; Jianbin Lai; Huawei Zhang; Hongyan Bao; Sanyuan Tang; Chengwei Yang; Peng Gao; Guixian Xia; Huishan Guo; Qi Xie
Journal:  Plant Mol Biol       Date:  2009-09-29       Impact factor: 4.076

4.  Mechanisms of haplotype divergence at the RGA08 nucleotide-binding leucine-rich repeat gene locus in wild banana (Musa balbisiana).

Authors:  Franc-Christophe Baurens; Stéphanie Bocs; Mathieu Rouard; Takashi Matsumoto; Robert N G Miller; Marguerite Rodier-Goud; Didier MBéguié-A-MBéguié; Nabila Yahiaoui
Journal:  BMC Plant Biol       Date:  2010-07-16       Impact factor: 4.215

5.  A pair of new BAC and BIBAC vectors that facilitate BAC/BIBAC library construction and intact large genomic DNA insert exchange.

Authors:  Xue Shi; Haiyang Zeng; Yadong Xue; Meizhong Luo
Journal:  Plant Methods       Date:  2011-10-11       Impact factor: 4.993

Review 6.  Domestication, genomics and the future for banana.

Authors:  J S Heslop-Harrison; Trude Schwarzacher
Journal:  Ann Bot       Date:  2007-08-31       Impact factor: 4.357

7.  Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutum L.).

Authors:  Mi-Kyung Lee; Yang Zhang; Meiping Zhang; Mark Goebel; Hee Jin Kim; Barbara A Triplett; David M Stelly; Hong-Bin Zhang
Journal:  BMC Genomics       Date:  2013-03-28       Impact factor: 3.969

8.  Insights into the Musa genome: syntenic relationships to rice and between Musa species.

Authors:  Magali Lescot; Pietro Piffanelli; Ana Y Ciampi; Manuel Ruiz; Guillaume Blanc; Jim Leebens-Mack; Felipe R da Silva; Candice M R Santos; Angélique D'Hont; Olivier Garsmeur; Alberto D Vilarinhos; Hiroyuki Kanamori; Takashi Matsumoto; Catherine M Ronning; Foo Cheung; Brian J Haas; Ryan Althoff; Tammy Arbogast; Erin Hine; Georgios J Pappas; Takuji Sasaki; Manoel T Souza; Robert N G Miller; Jean-Christophe Glaszmann; Christopher D Town
Journal:  BMC Genomics       Date:  2008-01-30       Impact factor: 3.969

  8 in total

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