Literature DB >> 15649602

Incorporating anatomically realistic cellular-level connectivity in neural network models of the rat hippocampus.

Giorgio A Ascoli1, John C Atkeson.   

Abstract

The specific connectivity patterns among neuronal classes can play an important role in the regulation of firing dynamics in many brain regions. Yet most neural network models are built based on vastly simplified connectivity schemes that do not accurately reflect the biological complexity. Taking the rat hippocampus as an example, we show here that enough quantitative information is available in the neuroanatomical literature to construct neural networks derived from accurate models of cellular connectivity. Computational simulations based on this approach lend themselves to a direct investigation of the potential relationship between cellular connectivity and network activity. We define a set of fundamental parameters to characterize cellular connectivity, and are collecting the related values for the rat hippocampus from published reports. Preliminary simulations based on these data uncovered a novel putative role for feedforward inhibitory neurons. In particular, "mopp" cells in the dentate gyrus are suitable to help maintain the firing rate of granule cells within physiological levels in response to a plausibly noisy input from the entorhinal cortex. The stabilizing effect of feedforward inhibition is further shown to depend on the particular ratio between the relative threshold values of the principal cells and the interneurons. We are freely distributing the connectivity data on which this study is based through a publicly accessible web archive (http://www.krasnow.gmu.edu/L-Neuron).

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Year:  2005        PMID: 15649602     DOI: 10.1016/j.biosystems.2004.09.024

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  13 in total

1.  Self-sustaining non-repetitive activity in a large scale neuronal-level model of the hippocampal circuit.

Authors:  Ruggero Scorcioni; David J Hamilton; Giorgio A Ascoli
Journal:  Neural Netw       Date:  2008-06-04

2.  Feed-forward inhibition as a buffer of the neuronal input-output relation.

Authors:  Michele Ferrante; Michele Migliore; Giorgio A Ascoli
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-08       Impact factor: 11.205

3.  Comprehensive Estimates of Potential Synaptic Connections in Local Circuits of the Rodent Hippocampal Formation by Axonal-Dendritic Overlap.

Authors:  Carolina Tecuatl; Diek W Wheeler; Nate Sutton; Giorgio A Ascoli
Journal:  J Neurosci       Date:  2020-12-23       Impact factor: 6.167

4.  Employing NeuGen 2.0 to automatically generate realistic morphologies of hippocampal neurons and neural networks in 3D.

Authors:  S Wolf; S Grein; G Queisser
Journal:  Neuroinformatics       Date:  2013-04

5.  Cooperation and competition of gamma oscillation mechanisms.

Authors:  Atthaphon Viriyopase; Raoul-Martin Memmesheimer; Stan Gielen
Journal:  J Neurophysiol       Date:  2016-02-24       Impact factor: 2.714

6.  An Ultrascalable Solution to Large-scale Neural Tissue Simulation.

Authors:  James Kozloski; John Wagner
Journal:  Front Neuroinform       Date:  2011-09-19       Impact factor: 4.081

7.  A Method for Estimating the Potential Synaptic Connections Between Axons and Dendrites From 2D Neuronal Images.

Authors:  Carolina Tecuatl; Diek W Wheeler; Giorgio A Ascoli
Journal:  Bio Protoc       Date:  2021-07-05

8.  Phasic cholinergic signaling promotes emergence of local gamma rhythms in excitatory-inhibitory networks.

Authors:  Yiqing Lu; Martin Sarter; Michal Zochowski; Victoria Booth
Journal:  Eur J Neurosci       Date:  2020-05-16       Impact factor: 3.386

9.  Input-to-output transformation in a model of the rat hippocampal CA1 network.

Authors:  Andrey V Olypher; William W Lytton; Astrid A Prinz
Journal:  Front Comput Neurosci       Date:  2012-08-06       Impact factor: 2.380

10.  BEAN: Interpretable and Efficient Learning With Biologically-Enhanced Artificial Neuronal Assembly Regularization.

Authors:  Yuyang Gao; Giorgio A Ascoli; Liang Zhao
Journal:  Front Neurorobot       Date:  2021-06-01       Impact factor: 2.650

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