Literature DB >> 15647303

MAGIC Tool: integrated microarray data analysis.

L J Heyer1, D Z Moskowitz, J A Abele, P Karnik, D Choi, A M Campbell, E E Oldham, B K Akin.   

Abstract

SUMMARY: Several programs are now available for analyzing the large datasets arising from cDNA microarray experiments. Most programs are expensive commercial packages or require expensive third party software. Some are freely available to academic researchers, but are limited to one operating system. MicroArray Genome Imaging and Clustering Tool (MAGIC Tool) is an open source program that works on all major platforms, and takes users 'from tiff to gif'. Several unique features of MAGIC Tool are particularly useful for research and teaching. AVAILABILITY: http://www.bio.davidson.edu/MAGIC

Mesh:

Year:  2005        PMID: 15647303     DOI: 10.1093/bioinformatics/bti247

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  12 in total

1.  Controlling microarray spot morphology with polymer liftoff arrays.

Authors:  Jose M Moran-Mirabal; Christine P Tan; Reid N Orth; Eric O Williams; Harold G Craighead; David M Lin
Journal:  Anal Chem       Date:  2007-02-01       Impact factor: 6.986

2.  How golden is silence? Teaching undergraduates the power and limits of RNA interference.

Authors:  Natalie H Kuldell
Journal:  CBE Life Sci Educ       Date:  2006       Impact factor: 3.325

3.  Genome Consortium for Active Teaching: meeting the goals of BIO2010.

Authors:  A Malcolm Campbell; Mary Lee S Ledbetter; Laura L M Hoopes; Todd T Eckdahl; Laurie J Heyer; Anne Rosenwald; Edison Fowlks; Scott Tonidandel; Brooke Bucholtz; Gail Gottfried
Journal:  CBE Life Sci Educ       Date:  2007       Impact factor: 3.325

4.  Investigative cases and student outcomes in an upper-division cell and molecular biology laboratory course at a minority-serving institution.

Authors:  Jonathan D Knight; Rebecca M Fulop; Leticia Márquez-Magaña; Kimberly D Tanner
Journal:  CBE Life Sci Educ       Date:  2008       Impact factor: 3.325

5.  Make microarray data with known ratios.

Authors:  A Malcolm Campbell; William T Hatfield; Laurie J Heyer
Journal:  CBE Life Sci Educ       Date:  2007       Impact factor: 3.325

6.  DNA microarrays in the undergraduate microbiology lab: experimentation and handling large datasets in as few as six weeks.

Authors:  David B Kushner
Journal:  J Microbiol Biol Educ       Date:  2009-12-17

7.  Enhancing interdisciplinary mathematics and biology education: a microarray data analysis course bridging these disciplines.

Authors:  Yolande V Tra; Irene M Evans
Journal:  CBE Life Sci Educ       Date:  2010       Impact factor: 3.325

8.  Development of a cross-disciplinary investigative model for the introduction of microarray techniques at non-r1 undergraduate institutions.

Authors:  David E Walker; Gary P Lutz; Consuelo J Alvarez
Journal:  CBE Life Sci Educ       Date:  2008       Impact factor: 3.325

9.  Datamining approach for automation of diagnosis of breast cancer in immunohistochemically stained tissue microarray images.

Authors:  Keerthana Prasad; Bernhard Zimmermann; Gopalakrishna Prabhu; Muktha Pai
Journal:  Open Med Inform J       Date:  2010-05-28

10.  Microarray data analysis and mining tools.

Authors:  Saravanakumar Selvaraj; Jeyakumar Natarajan
Journal:  Bioinformation       Date:  2011-04-22
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