Literature DB >> 15647299

GOAnno: GO annotation based on multiple alignment.

F Chalmel1, A Lardenois, J D Thompson, J Muller, J-A Sahel, T Léveillard, O Poch.   

Abstract

UNLABELLED: GOAnno is a web tool that automatically annotates proteins according to the Gene Ontology (GO) using evolutionary information available in hierarchized multiple alignments. GO terms present in the aligned functional subfamily can be cross-validated and propagated to obtain highly reliable predicted GO annotation based on the GOAnno algorithm. AVAILABILITY: The web tool and a reduced version for local installation are freely available at http://igbmc.u-strasbg.fr/GOAnno/GOAnno.html SUPPLEMENTARY INFORMATION: The website supplies a detailed explanation and illustration of the algorithm at http://igbmc.u-strasbg.fr/GOAnno/GOAnnoHelp.html.

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Year:  2005        PMID: 15647299     DOI: 10.1093/bioinformatics/bti252

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  13 in total

1.  PoGO: Prediction of Gene Ontology terms for fungal proteins.

Authors:  Jaehee Jung; Gangman Yi; Serenella A Sukno; Michael R Thon
Journal:  BMC Bioinformatics       Date:  2010-04-29       Impact factor: 3.169

2.  Transcriptome analysis identifies genes with enriched expression in the mouse central extended amygdala.

Authors:  J A J Becker; K Befort; C Blad; D Filliol; A Ghate; D Dembele; C Thibault; M Koch; J Muller; A Lardenois; O Poch; B L Kieffer
Journal:  Neuroscience       Date:  2008-08-14       Impact factor: 3.590

3.  Insights into metazoan evolution from Alvinella pompejana cDNAs.

Authors:  Nicolas Gagnière; Didier Jollivet; Isabelle Boutet; Yann Brélivet; Didier Busso; Corinne Da Silva; Françoise Gaill; Dominique Higuet; Stéphane Hourdez; Bernard Knoops; François Lallier; Emmanuelle Leize-Wagner; Jean Mary; Dino Moras; Emmanuel Perrodou; Jean-François Rees; Béatrice Segurens; Bruce Shillito; Arnaud Tanguy; Jean-Claude Thierry; Jean Weissenbach; Patrick Wincker; Franck Zal; Olivier Poch; Odile Lecompte
Journal:  BMC Genomics       Date:  2010-11-16       Impact factor: 3.969

4.  Conjugating effects of symbionts and environmental factors on gene expression in deep-sea hydrothermal vent mussels.

Authors:  Isabelle Boutet; Raymond Ripp; Odile Lecompte; Carole Dossat; Erwan Corre; Arnaud Tanguy; François H Lallier
Journal:  BMC Genomics       Date:  2011-10-28       Impact factor: 3.969

5.  MACSIMS: multiple alignment of complete sequences information management system.

Authors:  Julie D Thompson; Arnaud Muller; Andrew Waterhouse; Jim Procter; Geoffrey J Barton; Frédéric Plewniak; Olivier Poch
Journal:  BMC Bioinformatics       Date:  2006-06-23       Impact factor: 3.169

6.  Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

Authors:  Nikolai Daraselia; Anton Yuryev; Sergei Egorov; Ilya Mazo; Iaroslav Ispolatov
Journal:  BMC Bioinformatics       Date:  2007-07-10       Impact factor: 3.169

7.  Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton.

Authors:  Jean Muller; André Mehlen; Guillaume Vetter; Mikalai Yatskou; Arnaud Muller; Frédéric Chalmel; Olivier Poch; Evelyne Friederich; Laurent Vallar
Journal:  BMC Genomics       Date:  2007-08-29       Impact factor: 3.969

8.  MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences.

Authors:  Julie D Thompson; Stephen R Holbrook; Kazutaka Katoh; Patrice Koehl; Dino Moras; Eric Westhof; Olivier Poch
Journal:  Nucleic Acids Res       Date:  2005-07-25       Impact factor: 16.971

9.  Blast2GO: A comprehensive suite for functional analysis in plant genomics.

Authors:  Ana Conesa; Stefan Götz
Journal:  Int J Plant Genomics       Date:  2008

10.  High-throughput functional annotation and data mining with the Blast2GO suite.

Authors:  Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Tim D Williams; Shivashankar H Nagaraj; María José Nueda; Montserrat Robles; Manuel Talón; Joaquín Dopazo; Ana Conesa
Journal:  Nucleic Acids Res       Date:  2008-04-29       Impact factor: 16.971

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