Literature DB >> 15647292

ProtTest: selection of best-fit models of protein evolution.

Federico Abascal1, Rafael Zardoya, David Posada.   

Abstract

SUMMARY: Using an appropriate model of amino acid replacement is very important for the study of protein evolution and phylogenetic inference. We have built a tool for the selection of the best-fit model of evolution, among a set of candidate models, for a given protein sequence alignment. AVAILABILITY: ProtTest is available under the GNU license from http://darwin.uvigo.es

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Year:  2005        PMID： 15647292     DOI： 10.1093/bioinformatics/bti263

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  1421 in total

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Journal:  Appl Environ Microbiol       Date:  2014-11-14       Impact factor: 4.792

2.  Two loci in sorghum with NB-LRR encoding genes confer resistance to Colletotrichum sublineolum.

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3.  A mechanism for the evolution of phosphorylation sites.

Authors:  Samuel M Pearlman; Zach Serber; James E Ferrell
Journal:  Cell       Date:  2011-11-11       Impact factor: 41.582

4.  Evolutionary history and functional characterization of the amphibian xenosensor CAR.

Authors:  Marianne Mathäs; Oliver Burk; Huan Qiu; Christian Nusshag; Ute Gödtel-Armbrust; Dorothea Baranyai; Shiwei Deng; Kristin Römer; Dieudonné Nem; Björn Windshügel; Leszek Wojnowski
Journal:  Mol Endocrinol       Date:  2011-11-10

5.  The path to triacylglyceride obesity in the sta6 strain of Chlamydomonas reinhardtii.

Authors:  Ursula Goodenough; Ian Blaby; David Casero; Sean D Gallaher; Carrie Goodson; Shannon Johnson; Jae-Hyeok Lee; Sabeeha S Merchant; Matteo Pellegrini; Robyn Roth; Jannette Rusch; Manmilan Singh; James G Umen; Taylor L Weiss; Tuya Wulan
Journal:  Eukaryot Cell       Date:  2014-02-28

6.  Evidence for a diverse Cys-loop ligand-gated ion channel superfamily in early bilateria.

Authors:  Joseph A Dent
Journal:  J Mol Evol       Date:  2006-04-01       Impact factor: 2.395

7.  The diversity of rice phytocystatins.

Authors:  Ana Paula Christoff; Rogerio Margis
Journal:  Mol Genet Genomics       Date:  2014-08-07       Impact factor: 3.291

8.  Selective pressures of HLA genotypes and antiviral therapy on human immunodeficiency virus type 1 sequence mutation at a population level.

Authors:  Golo Ahlenstiel; Kirsten Roomp; Martin Däumer; Jacob Nattermann; Martin Vogel; Jürgen K Rockstroh; Niko Beerenwinkel; Rolf Kaiser; Hans-Dieter Nischalke; Tilman Sauerbruch; Thomas Lengauer; Ulrich Spengler
Journal:  Clin Vaccine Immunol       Date:  2007-08-22

9.  Adaptive evolution of osmoregulatory-related genes provides insight into salinity adaptation in Chinese mitten crab, Eriocheir sinensis.

Authors:  Zhengfei Wang; Yuze Bai; Daizhen Zhang; Boping Tang
Journal:  Genetica       Date:  2018-05-04       Impact factor: 1.082

10.  Sequential duplications of an ancient member of the DnaJ-family expanded the functional chaperone network in the eukaryotic cytosol.

Authors:  Chandan Sahi; Jacek Kominek; Thomas Ziegelhoffer; Hyun Young Yu; Maciej Baranowski; Jaroslaw Marszalek; Elizabeth A Craig
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240
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