Literature DB >> 15643845

Scaling of folding times with protein size.

Athi N Naganathan1, Victor Muñoz.   

Abstract

Current experimental data show a 9-orders-of-magnitude span in the folding times of proteins. Such a wide range is typically considered a direct consequence of the complexity in structural and sequence patterns of natural proteins. By using a database of 69 proteins and peptides analyzed experimentally, we observe that the folding time scales with the number of residues in the protein. The correlation coefficient is 0.74 or higher, and indicates that it is possible to predict the folding time of a protein with a precision of approximately 1.1 times decades from just its size. A simple thermodynamic analysis of this correlation suggests that the smallest proteins are expected to have very marginal free energy barriers to folding.

Mesh:

Substances:

Year:  2005        PMID: 15643845     DOI: 10.1021/ja044449u

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  47 in total

1.  Improvement of structure-based potentials for protein folding by native and nonnative hydrogen bonds.

Authors:  Marta Enciso; Antonio Rey
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

2.  Physical limits of cells and proteomes.

Authors:  Ken A Dill; Kingshuk Ghosh; Jeremy D Schmit
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-17       Impact factor: 11.205

3.  Self-catalyzed growth of S layers via an amorphous-to-crystalline transition limited by folding kinetics.

Authors:  Sungwook Chung; Seong-Ho Shin; Carolyn R Bertozzi; James J De Yoreo
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-07       Impact factor: 11.205

4.  The effect of electrostatics on the marginal cooperativity of an ultrafast folding protein.

Authors:  Tanay M Desai; Michele Cerminara; Mourad Sadqi; Victor Muñoz
Journal:  J Biol Chem       Date:  2010-08-22       Impact factor: 5.157

5.  Folding simulations of a de novo designed protein with a betaalphabeta fold.

Authors:  Yifei Qi; Yongqi Huang; Huanhuan Liang; Zhirong Liu; Luhua Lai
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

6.  Sequence, structure, and cooperativity in folding of elementary protein structural motifs.

Authors:  Jason K Lai; Ginka S Kubelka; Jan Kubelka
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-27       Impact factor: 11.205

7.  Laser flash photolysis of hydrogen peroxide to oxidize protein solvent-accessible residues on the microsecond timescale.

Authors:  David M Hambly; Michael L Gross
Journal:  J Am Soc Mass Spectrom       Date:  2005-11-02       Impact factor: 3.109

8.  Reversible thermal denaturation of a 60-kDa genetically engineered beta-sheet polypeptide.

Authors:  Igor K Lednev; Vladimir V Ermolenkov; Seiichiro Higashiya; Ludmila A Popova; Natalya I Topilina; John T Welch
Journal:  Biophys J       Date:  2006-08-04       Impact factor: 4.033

Review 9.  Dynamics, energetics, and structure in protein folding.

Authors:  Athi N Naganathan; Urmi Doshi; Adam Fung; Mourad Sadqi; Victor Muñoz
Journal:  Biochemistry       Date:  2006-07-18       Impact factor: 3.162

10.  Contour length and refolding rate of a small protein controlled by engineered disulfide bonds.

Authors:  Sri Rama Koti Ainavarapu; Jasna Brujic; Hector H Huang; Arun P Wiita; Hui Lu; Lewyn Li; Kirstin A Walther; Mariano Carrion-Vazquez; Hongbin Li; Julio M Fernandez
Journal:  Biophys J       Date:  2006-10-06       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.