Literature DB >> 15642187

Zipcodes and postage stamps: mRNA localisation signals and their trans-acting binding proteins.

Hervé Chabanon1, Ian Mickleburgh, John Hesketh.   

Abstract

Messenger RNA (mRNA) localisation is a widespread mechanism within eukaryotic cells that provides local synthesis of proteins close to where they function. In general, this mRNA targeting involves the cytoskeleton and signals within the 3' untranslated region (3'UTR) of the transcript. In this paper, the authors review what is known of the nature of the localisation signals and the proteins that interact with them in animal cells. Specific examples are selected to illustrate the emerging pattern of how these signals are formed by the mRNA and the key RNA-binding proteins. The signals are usually restricted to relatively short regions of the 3'UTR, but their precise nature varies, with both sequence and structure playing key roles. Repeat motifs and functional redundancy also appear as common features of these signals. The trans-acting factors involved in localisation include proteins having other roles in nuclear events, proteins that shuttle between the nucleus and the cytoplasm and translational factors. In addition, there is evidence of homology among these proteins and the mechanisms of localisation across eukaryotic species.

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Year:  2004        PMID: 15642187     DOI: 10.1093/bfgp/3.3.240

Source DB:  PubMed          Journal:  Brief Funct Genomic Proteomic        ISSN: 1473-9550


  39 in total

1.  An AU-rich stem-loop structure is a critical feature of the perinuclear localization signal of c-myc mRNA.

Authors:  Hervé Chabanon; Ian Mickleburgh; Brian Burtle; Christopher Pedder; John Hesketh
Journal:  Biochem J       Date:  2005-12-15       Impact factor: 3.857

Review 2.  A systematic analysis of disease-associated variants in the 3' regulatory regions of human protein-coding genes II: the importance of mRNA secondary structure in assessing the functionality of 3' UTR variants.

Authors:  Jian-Min Chen; Claude Férec; David N Cooper
Journal:  Hum Genet       Date:  2006-06-29       Impact factor: 4.132

Review 3.  A systematic analysis of disease-associated variants in the 3' regulatory regions of human protein-coding genes I: general principles and overview.

Authors:  Jian-Min Chen; Claude Férec; David N Cooper
Journal:  Hum Genet       Date:  2006-04-28       Impact factor: 4.132

4.  A novel mRNA affinity purification technique for the identification of interacting proteins and transcripts in ribonucleoprotein complexes.

Authors:  Boris Slobodin; Jeffrey E Gerst
Journal:  RNA       Date:  2010-09-28       Impact factor: 4.942

5.  Elongation factor 1alpha binds to the region of the metallothionein-1 mRNA implicated in perinuclear localization--importance of an internal stem-loop.

Authors:  Ian Mickleburgh; Hervé Chabanon; David Nury; Kunbo Fan; Brian Burtle; Zofia Chrzanowska-Lightowlers; John Hesketh
Journal:  RNA       Date:  2006-05-24       Impact factor: 4.942

6.  Polysome trafficking of transcripts and microRNAs in regenerating liver after partial hepatectomy.

Authors:  Betsy T Kren; Phillip Y-P Wong; Akira Shiota; Xiaoxiao Zhang; Yan Zeng; Clifford J Steer
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2009-09-24       Impact factor: 4.052

7.  An RNA-zipcode-independent mechanism that localizes Dia1 mRNA to the perinuclear ER through interactions between Dia1 nascent peptide and Rho-GTP.

Authors:  Guoning Liao; Xinghong Ma; Gang Liu
Journal:  J Cell Sci       Date:  2011-01-25       Impact factor: 5.285

8.  Structural diversity and differential expression of novel human intersectin 1 isoforms.

Authors:  Sergii Kropyvko; Dmytro Gerasymchuk; Inessa Skrypkina; Mykola Dergai; Oleksandr Dergai; Oleksii Nikolaienko; Alla Rynditch; Liudmyla Tsyba
Journal:  Mol Biol Rep       Date:  2009-09-24       Impact factor: 2.316

9.  Localization of mRNAs coding for peroxisomal proteins in the yeast, Saccharomyces cerevisiae.

Authors:  Gadi Zipor; Liora Haim-Vilmovsky; Rita Gelin-Licht; Noga Gadir; Cecile Brocard; Jeffrey E Gerst
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-10       Impact factor: 11.205

10.  Alternative polyadenylation in glioblastoma multiforme and changes in predicted RNA binding protein profiles.

Authors:  Jiaofang Shao; Jing Zhang; Zengming Zhang; Huawei Jiang; Xiaoyan Lou; Bingding Huang; Gregory Foltz; Qing Lan; Qiang Huang; Biaoyang Lin
Journal:  OMICS       Date:  2013-02-19
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