Literature DB >> 15638682

The influence of temperature and density functional models in ab initio molecular dynamics simulation of liquid water.

Joost VandeVondele1, Fawzi Mohamed, Matthias Krack, Jürg Hutter, Michiel Sprik, Michele Parrinello.   

Abstract

The performance of density functional theory methods for the modeling of condensed aqueous systems is hard to predict and validation by ab initio molecular simulation of liquid water is absolutely necessary. In order to assess the reliability of these tests, the effect of temperature on the structure and dynamics of liquid water has been characterized with 16 simulations of 20 ps in the temperature range of 280-380 K. We find a pronounced influence of temperature on the pair correlation functions and on the diffusion constant including nonergodic behavior on the time scale of the simulation in the lower temperature range (which includes ambient temperature). These observations were taken into account in a consistent comparison of a series of density functionals (BLYP, PBE, TPSS, OLYP, HCTH120, HCTH407). All simulations were carried out using an ab initio molecular dynamics approach in which wave functions are represented using Gaussians and the density is expanded in an auxiliary basis of plane waves. Whereas the first three functionals show similar behavior, it is found that the latter three functionals yield more diffusive dynamics and less structure. (c) 2005 American Institute of Physics.

Entities:  

Year:  2005        PMID: 15638682     DOI: 10.1063/1.1828433

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  16 in total

Review 1.  Proton solvation and transport in aqueous and biomolecular systems: insights from computer simulations.

Authors:  Jessica M J Swanson; C Mark Maupin; Hanning Chen; Matt K Petersen; Jiancong Xu; Yujie Wu; Gregory A Voth
Journal:  J Phys Chem B       Date:  2007-04-13       Impact factor: 2.991

2.  Lagrangian formulation with dissipation of Born-Oppenheimer molecular dynamics using the density-functional tight-binding method.

Authors:  Guishan Zheng; Anders M N Niklasson; Martin Karplus
Journal:  J Chem Phys       Date:  2011-07-28       Impact factor: 3.488

3.  Carbon dioxide transport in molten calcium carbonate occurs through an oxo-Grotthuss mechanism via a pyrocarbonate anion.

Authors:  Dario Corradini; François-Xavier Coudert; Rodolphe Vuilleumier
Journal:  Nat Chem       Date:  2016-02-29       Impact factor: 24.427

4.  Quantum and classical dynamics simulations of ATP hydrolysis in solution.

Authors:  Christopher B Harrison; Klaus Schulten
Journal:  J Chem Theory Comput       Date:  2012-05-21       Impact factor: 6.006

5.  Solvation structure of the halides from x-ray absorption spectroscopy.

Authors:  Matthew Antalek; Elisabetta Pace; Britt Hedman; Keith O Hodgson; Giovanni Chillemi; Maurizio Benfatto; Ritimukta Sarangi; Patrick Frank
Journal:  J Chem Phys       Date:  2016-07-28       Impact factor: 3.488

Review 6.  Implicit Solvation Methods for Catalysis at Electrified Interfaces.

Authors:  Stefan Ringe; Nicolas G Hörmann; Harald Oberhofer; Karsten Reuter
Journal:  Chem Rev       Date:  2021-12-20       Impact factor: 72.087

7.  Proton affinity of the histidine-tryptophan cluster motif from the influenza A virus from ab initio molecular dynamics.

Authors:  Arindam Bankura; Michael L Klein; Vincenzo Carnevale
Journal:  Chem Phys       Date:  2013-08-30       Impact factor: 2.348

8.  Benchmark Study of the SCC-DFTB Approach for a Biomolecular Proton Channel.

Authors:  Ruibin Liang; Jessica M J Swanson; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2014-01-14       Impact factor: 6.006

9.  Anomalous water diffusion in salt solutions.

Authors:  Yun Ding; Ali A Hassanali; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-12       Impact factor: 11.205

10.  First-principles study of the structure of water layers on flat and stepped Pb electrodes.

Authors:  Xiaohang Lin; Ferdinand Evers; Axel Groß
Journal:  Beilstein J Nanotechnol       Date:  2016-04-11       Impact factor: 3.649

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