Literature DB >> 15638673

A bond-order analysis of the mechanism for hydrated proton mobility in liquid water.

Hadas Lapid1, Noam Agmon, Matt K Petersen, Gregory A Voth.   

Abstract

Bond-order analysis is introduced to facilitate the study of cooperative many-molecule effects on proton mobility in liquid water, as simulated using the multistate empirical valence-bond methodology. We calculate the temperature dependence for proton mobility and the total effective bond orders in the first two solvation shells surrounding the H(5)O(2) (+) proton-transferring complex. We find that proton-hopping between adjacent water molecules proceeds via this intermediate, but couples to hydrogen-bond dynamics in larger water clusters than previously anticipated. A two-color classification of these hydrogen bonds leads to an extended mechanism for proton mobility. (c) 2005 American Institute of Physics.

Entities:  

Year:  2005        PMID: 15638673     DOI: 10.1063/1.1814973

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  21 in total

1.  Charge delocalization in proton channels, I: the aquaporin channels and proton blockage.

Authors:  Hanning Chen; Boaz Ilan; Yujie Wu; Fangqiang Zhu; Klaus Schulten; Gregory A Voth
Journal:  Biophys J       Date:  2006-10-20       Impact factor: 4.033

2.  Charge delocalization in proton channels, II: the synthetic LS2 channel and proton selectivity.

Authors:  Yujie Wu; Boaz Ilan; Gregory A Voth
Journal:  Biophys J       Date:  2006-10-20       Impact factor: 4.033

Review 3.  Proton-coupled electron transfer.

Authors:  My Hang V Huynh; Thomas J Meyer
Journal:  Chem Rev       Date:  2007-11       Impact factor: 60.622

Review 4.  Proton solvation and transport in aqueous and biomolecular systems: insights from computer simulations.

Authors:  Jessica M J Swanson; C Mark Maupin; Hanning Chen; Matt K Petersen; Jiancong Xu; Yujie Wu; Gregory A Voth
Journal:  J Phys Chem B       Date:  2007-04-13       Impact factor: 2.991

5.  Many-body energies during proton transfer in an aqueous system.

Authors:  Ajay Chaudhari; Gul Afroz Meraj; Shyi-Long Lee
Journal:  J Mol Model       Date:  2010-02-27       Impact factor: 1.810

6.  A 'clusters-in-liquid' method for calculating infrared spectra identifies the proton-transfer mode in acidic aqueous solutions.

Authors:  Waldemar Kulig; Noam Agmon
Journal:  Nat Chem       Date:  2012-11-25       Impact factor: 24.427

7.  Energetics and dynamics of proton transfer reactions along short water wires.

Authors:  Ville R I Kaila; Gerhard Hummer
Journal:  Phys Chem Chem Phys       Date:  2011-06-23       Impact factor: 3.676

8.  Infrared spectroscopy: The acid test for water structure.

Authors:  Noam Agmon
Journal:  Nat Chem       Date:  2016-03       Impact factor: 24.427

9.  Proton transfer in water wires in proteins: modulation by local constraint and polarity in gramicidin a channels.

Authors:  Shasikala Narayan; Debra L Wyatt; David S Crumrine; Samuel Cukierman
Journal:  Biophys J       Date:  2007-05-11       Impact factor: 4.033

10.  Understanding and Tracking the Excess Proton in Ab Initio Simulations; Insights from IR Spectra.

Authors:  Chenghan Li; Jessica M J Swanson
Journal:  J Phys Chem B       Date:  2020-06-24       Impact factor: 2.991

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