Literature DB >> 15630559

Homonuclear chemical shift correlation in rotating solids via RNnu n symmetry-based adiabatic RF pulse schemes.

Kerstin Riedel1, Jörg Leppert, Sabine Häfner, Oliver Ohlenschläger, Matthias Görlach, Ramadurai Ramachandran.   

Abstract

The efficacy of RN(nu) (n) symmetry-based adiabatic Zero-Quantum (ZQ) dipolar recoupling schemes for obtaining chemical shift correlation data at moderate magic angle spinning frequencies has been evaluated. RN(nu) (n) sequences generally employ basic inversion elements that correspond to a net 180 degrees rotation about the rotating frame x-axis. It is shown here via numerical simulations and experimental measurements that it is also possible to achieve efficient ZQ dipolar recoupling via RN(nu) (n) schemes employing adiabatic pulses. Such an approach was successfully used for obtaining (13)C chemical shift correlation spectra of a uniformly labelled sample of (CUG)(97) - a triplet repeat expansion RNA that has been implicated in the neuromuscular disease myotonic dystrophy. An analysis of the (13)C sugar carbon chemical shifts suggests, in agreement with our recent (15)N MAS-NMR studies, that this RNA adopts an Alpha-helical conformation.

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Year:  2004        PMID: 15630559     DOI: 10.1007/s10858-004-4056-7

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  19 in total

1.  Homonuclear zero-quantum recoupling in fast magic-angle spinning nuclear magnetic resonance.

Authors:  Andreas Brinkmann; Jörn Schmedt auf der Günne; Malcolm H Levitt
Journal:  J Magn Reson       Date:  2002-05       Impact factor: 2.229

Review 2.  Toxic RNA in the nucleus: unstable microsatellite expression in neuromuscular disease.

Authors:  Keith R Nykamp; Maurice S Swanson
Journal:  Prog Mol Subcell Biol       Date:  2004

Review 3.  Dipolar recoupling in MAS spectra of biological solids.

Authors:  R G Griffin
Journal:  Nat Struct Biol       Date:  1998-07

4.  Broadband and adiabatic inversion of a two-level system by phase-modulated pulses.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1985-12

5.  Visualization of double-stranded RNAs from the myotonic dystrophy protein kinase gene and interactions with CUG-binding protein.

Authors:  S Michalowski; J W Miller; C R Urbinati; M Paliouras; M S Swanson; J Griffith
Journal:  Nucleic Acids Res       Date:  1999-09-01       Impact factor: 16.971

6.  Recruitment of human muscleblind proteins to (CUG)(n) expansions associated with myotonic dystrophy.

Authors:  J W Miller; C R Urbinati; P Teng-Umnuay; M G Stenberg; B J Byrne; C A Thornton; M S Swanson
Journal:  EMBO J       Date:  2000-09-01       Impact factor: 11.598

7.  Dependence of 13C NMR chemical shifts on conformations of rna nucleosides and nucleotides.

Authors:  M Ebrahimi; P Rossi; C Rogers; G S Harbison
Journal:  J Magn Reson       Date:  2001-05       Impact factor: 2.229

8.  Identification of NH...N hydrogen bonds by magic angle spinning solid state NMR in a double-stranded RNA associated with myotonic dystrophy.

Authors:  Jörg Leppert; Carl R Urbinati; Sabine Häfner; Oliver Ohlenschläger; Maurice S Swanson; Matthias Görlach; Ramadurai Ramachandran
Journal:  Nucleic Acids Res       Date:  2004-02-18       Impact factor: 16.971

9.  Fast broadband inversion by adiabatic pulses.

Authors:  T L Hwang; P C van Zijl; M Garwood
Journal:  J Magn Reson       Date:  1998-07       Impact factor: 2.229

Review 10.  Myotonic dystrophy: RNA pathogenesis comes into focus.

Authors:  Laura P W Ranum; John W Day
Journal:  Am J Hum Genet       Date:  2004-04-02       Impact factor: 11.025

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  6 in total

1.  Characterisation of hydrogen bonding networks in RNAs via magic angle spinning solid state NMR spectroscopy.

Authors:  Kerstin Riedel; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

2.  Solid state NMR at high magic angle spinning frequencies: dipolar chemical shift correlation with adiabatic inversion pulse based RF pulse schemes.

Authors:  Christian Herbst; Kerstin Riedel; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2006-07-25       Impact factor: 2.835

3.  Tailoring broadband inversion pulses for MAS solid state NMR.

Authors:  Kerstin Riedel; Christian Herbst; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2006-07-29       Impact factor: 2.835

4.  MAS solid state NMR of RNAs with multiple receivers.

Authors:  Christian Herbst; Kerstin Riedel; Yvonne Ihle; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2008-05-31       Impact factor: 2.835

5.  Nucleotide-type chemical shift assignment of the encapsulated 40 kbp dsDNA in intact bacteriophage T7 by MAS solid-state NMR.

Authors:  Gili Abramov; Amir Goldbourt
Journal:  J Biomol NMR       Date:  2014-05-30       Impact factor: 2.835

6.  Broadband homonuclear chemical shift correlation at high MAS frequencies: a study of tanh/tan adiabatic RF pulse schemes without 1H decoupling during mixing.

Authors:  Kerstin Riedel; Christian Herbst; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2007-02-08       Impact factor: 2.835

  6 in total

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