Literature DB >> 15629654

High-throughput film-densitometry: an efficient approach to generate large data sets.

Dieter Typke1, Robert A Nordmeyer, Arthur Jones, Juyoung Lee, Agustin Avila-Sakar, Kenneth H Downing, Robert M Glaeser.   

Abstract

A film-handling machine (robot) has been built which can, in conjunction with a commercially available film densitometer, exchange and digitize over 300 electron micrographs per day. Implementation of robotic film handling effectively eliminates the delay and tedium associated with digitizing images when data are initially recorded on photographic film. The modulation transfer function (MTF) of the commercially available densitometer is significantly worse than that of a high-end, scientific microdensitometer. Nevertheless, its signal-to-noise ratio (S/N) is quite excellent, allowing substantial restoration of the output to "near-to-perfect" performance. Due to the large area of the standard electron microscope film that can be digitized by the commercial densitometer (up to 10,000 x 13,680 pixels with an appropriately coded holder), automated film digitization offers a fast and inexpensive alternative to high-end CCD cameras as a means of acquiring large amounts of image data in electron microscopy.

Mesh:

Year:  2005        PMID: 15629654     DOI: 10.1016/j.jsb.2004.09.003

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  9 in total

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Authors:  Andres E Leschziner; Anjanabha Saha; Jacqueline Wittmeyer; Yongli Zhang; Carlos Bustamante; Bradley R Cairns; Eva Nogales
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-13       Impact factor: 11.205

2.  Cryoelectron microscopy map of Atadenovirus reveals cross-genus structural differences from human adenovirus.

Authors:  Radosav S Pantelic; Linda J Lockett; Rosalba Rothnagel; Ben Hankamer; Gerald W Both
Journal:  J Virol       Date:  2008-05-28       Impact factor: 5.103

3.  Disulfide linkage and structure of highly stable yeast-derived virus-like particles of murine polyomavirus.

Authors:  Claudia Simon; Thomas Klose; Sabine Herbst; Bong Gyoon Han; Andrea Sinz; Robert M Glaeser; Milton T Stubbs; Hauke Lilie
Journal:  J Biol Chem       Date:  2014-02-24       Impact factor: 5.157

4.  Single particle cryo-electron microscopy and 3-D reconstruction of viruses.

Authors:  Fei Guo; Wen Jiang
Journal:  Methods Mol Biol       Date:  2014

5.  Structural basis of interprotofilament interaction and lateral deformation of microtubules.

Authors:  Haixin Sui; Kenneth H Downing
Journal:  Structure       Date:  2010-08-11       Impact factor: 5.006

6.  Chapter 2 Correlated light and electron microscopy/electron tomography of mitochondria in situ.

Authors:  Guy A Perkins; Mei G Sun; Terrence G Frey
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

Review 7.  Big data in cryoEM: automated collection, processing and accessibility of EM data.

Authors:  Philip R Baldwin; Yong Zi Tan; Edward T Eng; William J Rice; Alex J Noble; Carl J Negro; Michael A Cianfrocco; Clinton S Potter; Bridget Carragher
Journal:  Curr Opin Microbiol       Date:  2017-10-31       Impact factor: 7.934

Review 8.  Structural analysis of macromolecular assemblies by electron microscopy.

Authors:  E V Orlova; H R Saibil
Journal:  Chem Rev       Date:  2011-09-16       Impact factor: 60.622

9.  The beginning of kinesin's force-generating cycle visualized at 9-A resolution.

Authors:  Charles V Sindelar; Kenneth H Downing
Journal:  J Cell Biol       Date:  2007-04-30       Impact factor: 10.539

  9 in total

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