Literature DB >> 15625321

The energetic conversion competence of Escherichia coli during aerobic respiration studied by 31P NMR using a circulating fermentation system.

Yasushi Noguchi1, Yuta Nakai, Nobuhisa Shimba, Hiroshi Toyosaki, Yoshio Kawahara, Shinichi Sugimoto, Ei-Ichiro Suzuki.   

Abstract

To determine the actual potential of the energetic conversion efficiency of Escherichia coli during aerobic respiration, apparent P/O ratios (P/O(app)) under either limited or standard glucose-feeding conditions were estimated. The previously reported circulating fermentation system (CFS) was used, and (31)P NMR saturation-transfer (ST) techniques were employed. By coupling with on-line NMR observations, CFS allowed us to evaluate cellular energetics directly, with both the dissolved oxygen tension and glucose feeding precisely controlled to prevent the effect of substrate-level phosphorylation based on aerobic or anaerobic acidogenesis in E. coli cells. Phosphate consumption rates under standard and limited glucose-conditions were estimated as 4.62 +/- 0.46 and 1.99 +/- 0.11 micromol/s g of dry cell weight (DCW), respectively. Using simultaneously assessed O(2) consumption rates, the P/O(app) values under these two conditions were estimated as 1.4 +/- 0.3 and 1.5 +/- 0.1, respectively. To correlate the obtained P/O(app) values with the potential efficiency of respiratory enzymes, we determined the activities of two NADH dehydrogenases (NDH 1 and 2) and two ubiquinol oxidases (bo- and bd-type) during the periods when ST was performed. NDH-1 activities in standard or limited glucose cultures were maintained at 57% or 58% of the total NADH oxidizing activity. The percentages of bo-type oxidase activity in relation to the total ubiqinol oxidizing activity under the standard and limited glucose conditions were 32% and 36%, respectively. These percentages of enzymatic activities represent the respiratory competence of E. coli cells, suggesting that, during the NMR observatory period, the enzymatic activity was not at a maximum, which could also explain the estimated P/O(app) values. If this is the case, enhancing the expression of the bo-type oxidase or disrupting of the bd-type oxidase gene could be effective approach to increasing both the P/O ratio and cellular yields.

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Year:  2004        PMID: 15625321     DOI: 10.1093/jb/mvh147

Source DB:  PubMed          Journal:  J Biochem        ISSN: 0021-924X            Impact factor:   3.387


  11 in total

1.  Central metabolic responses to the overproduction of fatty acids in Escherichia coli based on 13C-metabolic flux analysis.

Authors:  Lian He; Yi Xiao; Nikodimos Gebreselassie; Fuzhong Zhang; Maciek R Antoniewiez; Yinjie J Tang; Lifeng Peng
Journal:  Biotechnol Bioeng       Date:  2014-03       Impact factor: 4.530

2.  Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring.

Authors:  Christopher P Long; Jacqueline E Gonzalez; Adam M Feist; Bernhard O Palsson; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2017-09-23       Impact factor: 9.783

3.  Stress-induced evolution of Escherichia coli points to original concepts in respiratory cofactor selectivity.

Authors:  Clément Auriol; Gwénaëlle Bestel-Corre; Jean-Baptiste Claude; Philippe Soucaille; Isabelle Meynial-Salles
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-04       Impact factor: 11.205

4.  Comprehensive analysis of glucose and xylose metabolism in Escherichia coli under aerobic and anaerobic conditions by 13C metabolic flux analysis.

Authors:  Jacqueline E Gonzalez; Christopher P Long; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2016-11-11       Impact factor: 9.783

5.  A genome-scale metabolic model of Cupriavidus necator H16 integrated with TraDIS and transcriptomic data reveals metabolic insights for biotechnological applications.

Authors:  Nicole Pearcy; Marco Garavaglia; Thomas Millat; James P Gilbert; Yoseb Song; Hassan Hartman; Craig Woods; Claudio Tomi-Andrino; Rajesh Reddy Bommareddy; Byung-Kwan Cho; David A Fell; Mark Poolman; John R King; Klaus Winzer; Jamie Twycross; Nigel P Minton
Journal:  PLoS Comput Biol       Date:  2022-05-23       Impact factor: 4.779

6.  Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1.

Authors:  Matthew A Oberhardt; Jacek Puchałka; Kimberly E Fryer; Vítor A P Martins dos Santos; Jason A Papin
Journal:  J Bacteriol       Date:  2008-01-11       Impact factor: 3.490

7.  Respiration of Escherichia coli can be fully uncoupled via the nonelectrogenic terminal cytochrome bd-II oxidase.

Authors:  M Bekker; S de Vries; A Ter Beek; K J Hellingwerf; M J Teixeira de Mattos
Journal:  J Bacteriol       Date:  2009-06-19       Impact factor: 3.490

8.  A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011.

Authors:  Jeffrey D Orth; Tom M Conrad; Jessica Na; Joshua A Lerman; Hojung Nam; Adam M Feist; Bernhard Ø Palsson
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

Review 9.  Microbial electron transport and energy conservation - the foundation for optimizing bioelectrochemical systems.

Authors:  Frauke Kracke; Igor Vassilev; Jens O Krömer
Journal:  Front Microbiol       Date:  2015-06-11       Impact factor: 5.640

10.  A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.

Authors:  Adam M Feist; Christopher S Henry; Jennifer L Reed; Markus Krummenacker; Andrew R Joyce; Peter D Karp; Linda J Broadbelt; Vassily Hatzimanikatis; Bernhard Ø Palsson
Journal:  Mol Syst Biol       Date:  2007-06-26       Impact factor: 11.429

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