Literature DB >> 15614621

Development and validation of computational models of cellular interaction.

R H Smallwood1, W M L Holcombe, D C Walker.   

Abstract

In this paper we take the view that computational models of biological systems should satisfy two conditions - they should be able to predict function at a systems biology level, and robust techniques of validation against biological models must be available. A modelling paradigm for developing a predictive computational model of cellular interaction is described, and methods of providing robust validation against biological models are explored, followed by a consideration of software issues.

Mesh:

Year:  2004        PMID: 15614621     DOI: 10.1007/s10735-004-2660-1

Source DB:  PubMed          Journal:  J Mol Histol        ISSN: 1567-2379            Impact factor:   2.611


  21 in total

1.  Evolving mechanisms of morphogenesis: on the interplay between differential adhesion and cell differentiation.

Authors:  P Hogeweg
Journal:  J Theor Biol       Date:  2000-04-21       Impact factor: 2.691

2.  Cell-level finite element studies of viscous cells in planar aggregates.

Authors:  H H Chen; G W Brodland
Journal:  J Biomech Eng       Date:  2000-08       Impact factor: 2.097

3.  A proliferation control network model: the simulation of two-dimensional epithelial homeostasis.

Authors:  D Morel; R Marcelpoil; G Brugal
Journal:  Acta Biotheor       Date:  2001       Impact factor: 1.774

4.  Computer simulations of mitosis and interdependencies between mitosis orientation, cell shape and epithelia reshaping.

Authors:  G Wayne Brodland; Jim H Veldhuis
Journal:  J Biomech       Date:  2002-05       Impact factor: 2.712

5.  Mechanotransduction through the cytoskeleton.

Authors:  Yinon Shafrir; Gabor Forgacs
Journal:  Am J Physiol Cell Physiol       Date:  2002-03       Impact factor: 4.249

6.  Opposing views on tensegrity as a structural framework for understanding cell mechanics.

Authors:  D E Ingber
Journal:  J Appl Physiol (1985)       Date:  2000-10

7.  Simulations of the erythrocyte cytoskeleton at large deformation. I. Microscopic models.

Authors:  S K Boey; D H Boal; D E Discher
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

8.  A computer graphic simulation of squamous epithelium.

Authors:  D Stekel; J Rashbass; E D Williams
Journal:  J Theor Biol       Date:  1995-08-07       Impact factor: 2.691

9.  The embryonic cell lineage of the nematode Caenorhabditis elegans.

Authors:  J E Sulston; E Schierenberg; J G White; J N Thomson
Journal:  Dev Biol       Date:  1983-11       Impact factor: 3.582

Review 10.  Cellular tensegrity: defining new rules of biological design that govern the cytoskeleton.

Authors:  D E Ingber
Journal:  J Cell Sci       Date:  1993-03       Impact factor: 5.285

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  7 in total

1.  Crypt dynamics and colorectal cancer: advances in mathematical modelling.

Authors:  I M M van Leeuwen; H M Byrne; O E Jensen; J R King
Journal:  Cell Prolif       Date:  2006-06       Impact factor: 6.831

Review 2.  A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development.

Authors:  Giovanni De Matteis; Alex Graudenzi; Marco Antoniotti
Journal:  J Math Biol       Date:  2012-05-08       Impact factor: 2.259

Review 3.  Changes in cellular mechanical properties during onset or progression of colorectal cancer.

Authors:  Gabriele Ciasca; Massimiliano Papi; Eleonora Minelli; Valentina Palmieri; Marco De Spirito
Journal:  World J Gastroenterol       Date:  2016-08-28       Impact factor: 5.742

Review 4.  Modeling bioavailability to organs protected by biological barriers.

Authors:  Nadia Quignot
Journal:  In Silico Pharmacol       Date:  2013-05-31

5.  A patient-specific in silico model of inflammation and healing tested in acute vocal fold injury.

Authors:  Nicole Y K Li; Katherine Verdolini; Gilles Clermont; Qi Mi; Elaine N Rubinstein; Patricia A Hebda; Yoram Vodovotz
Journal:  PLoS One       Date:  2008-07-30       Impact factor: 3.240

Review 6.  Investigating biocomplexity through the agent-based paradigm.

Authors:  Himanshu Kaul; Yiannis Ventikos
Journal:  Brief Bioinform       Date:  2013-11-12       Impact factor: 11.622

Review 7.  Adult Stem Cell Therapies for Wound Healing: Biomaterials and Computational Models.

Authors:  Daniele Tartarini; Elisa Mele
Journal:  Front Bioeng Biotechnol       Date:  2016-01-11
  7 in total

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