Literature DB >> 15613390

GPSDB: a new database for synonyms expansion of gene and protein names.

Violaine Pillet1, Marc Zehnder, Alexander K Seewald, Anne-Lise Veuthey, Johann Petrak.   

Abstract

UNLABELLED: We present a new database, GPSDB (Gene and Protein Synonyms DataBase) which collects gene/protein names, in a species specific way, from 14 main biological resources. A web-based search interface gives access to the database: given a gene/protein name, it retrieves all synonyms for this entity and queries Medline with a set of user-selected terms. AVAILABILITY: GPSDB is freely available from http://biomint.oefai.at/ CONTACT: johann@oefai.at.

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Year:  2004        PMID： 15613390     DOI： 10.1093/bioinformatics/bti235

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  5 in total

1.  ARC: automated resource classifier for agglomerative functional classification of prokaryotic proteins using annotation texts.

Authors:  Muthiah Gnanamani; Naveen Kumar; Srinivasan Ramachandran
Journal:  J Biosci       Date:  2007-08       Impact factor: 1.826

2.  Application of text-mining for updating protein post-translational modification annotation in UniProtKB.

Authors:  Anne-Lise Veuthey; Alan Bridge; Julien Gobeill; Patrick Ruch; Johanna R McEntyre; Lydie Bougueleret; Ioannis Xenarios
Journal:  BMC Bioinformatics       Date:  2013-03-22       Impact factor: 3.169

3.  Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database.

Authors:  Dina Vishnyakova; Emilie Pasche; Patrick Ruch
Journal:  Database (Oxford)       Date:  2012-12-05       Impact factor: 3.451

4.  Introducing meta-services for biomedical information extraction.

Authors:  Florian Leitner; Martin Krallinger; Carlos Rodriguez-Penagos; Jörg Hakenberg; Conrad Plake; Cheng-Ju Kuo; Chun-Nan Hsu; Richard Tzong-Han Tsai; Hsi-Chuan Hung; William W Lau; Calvin A Johnson; Rune Saetre; Kazuhiro Yoshida; Yan Hua Chen; Sun Kim; Soo-Yong Shin; Byoung-Tak Zhang; William A Baumgartner; Lawrence Hunter; Barry Haddow; Michael Matthews; Xinglong Wang; Patrick Ruch; Frédéric Ehrler; Arzucan Ozgür; Güneş Erkan; Dragomir R Radev; Michael Krauthammer; ThaiBinh Luong; Robert Hoffmann; Chris Sander; Alfonso Valencia
Journal:  Genome Biol       Date:  2008-09-01       Impact factor: 13.583

5.  AgeFactDB--the JenAge Ageing Factor Database--towards data integration in ageing research.

Authors:  Rolf Hühne; Torsten Thalheim; Jürgen Sühnel
Journal:  Nucleic Acids Res       Date:  2013-11-11       Impact factor: 16.971
  5 in total

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