Literature DB >> 15613388

An enhanced Java graph applet interface for visualizing interactomes.

Aaron N Chang1, Jason McDermott, Ram Samudrala.   

Abstract

UNLABELLED: We have developed several new navigation features for a Java graph applet previously released for visualizing protein-protein interactions. This graph viewer can be used to navigate any molecular interactome dataset. We have successfully implemented this tool for exploring protein networks stored in the Bioverse interaction database. AVAILABILITY: http://bioverse.compbio.washington.edu/viewer CONTACT: ram@compbio.washington.edu.

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Year:  2004        PMID： 15613388     DOI： 10.1093/bioinformatics/bti237

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  4 in total

1.  DRYGIN: a database of quantitative genetic interaction networks in yeast.

Authors:  Judice L Y Koh; Huiming Ding; Michael Costanzo; Anastasia Baryshnikova; Kiana Toufighi; Gary D Bader; Chad L Myers; Brenda J Andrews; Charles Boone
Journal:  Nucleic Acids Res       Date:  2009-10-30       Impact factor: 16.971

Review 2.  Cataloging the relationships between proteins: a review of interaction databases.

Authors:  Carol Rohl; Yancey Price; Tiffany B Fischer; Melissa Paczkowski; Michael F Zettel; Jerry Tsai
Journal:  Mol Biotechnol       Date:  2006-09       Impact factor: 2.860

3.  BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes.

Authors:  Jason McDermott; Michal Guerquin; Zach Frazier; Aaron N Chang; Ram Samudrala
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

4.  INTEGRATOR: interactive graphical search of large protein interactomes over the Web.

Authors:  Aaron N Chang; Jason McDermott; Zachary Frazier; Michal Guerquin; Ram Samudrala
Journal:  BMC Bioinformatics       Date:  2006-03-16       Impact factor: 3.169
  4 in total

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