Literature DB >> 15608125

Thermodynamic consequences of disrupting a water-mediated hydrogen bond network in a protein:pheromone complex.

Scott D Sharrow1, Katherine A Edmonds, Michael A Goodman, Milos V Novotny, Martin J Stone.   

Abstract

The mouse pheromones (+/-)-2-sec-butyl-4,5-dihydrothiazole (SBT) and 6-hydroxy-6-methyl-3-heptanone (HMH) bind into an occluded hydrophobic cavity in the mouse major urinary protein (MUP-1). Although the ligands are structurally unrelated, in both cases binding is accompanied by formation of a similar buried, water-mediated hydrogen bond network between the ligand and several backbone and side chain groups on the protein. To investigate the energetic contribution of this hydrogen bond network to ligand binding, we have applied isothermal titration calorimetry to measure the binding thermodynamics using several MUP mutants and ligand analogs. Mutation of Tyr-120 to Phe, which disrupts a hydrogen bond from the phenolic hydroxyl group of Tyr-120 to one of the bound water molecules, results in a substantial loss of favorable binding enthalpy, which is partially compensated by a favorable change in binding entropy. A similar thermodynamic effect was observed when the hydrogen bonded nitrogen atom of the heterocyclic ligand was replaced by a methyne group. Several other modifications of the protein or ligand had smaller effects on the binding thermodynamics. The data provide supporting evidence for the role of the hydrogen bond network in stabilizing the complex.

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Year:  2005        PMID: 15608125      PMCID: PMC2253314          DOI: 10.1110/ps.04912605

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  37 in total

1.  Positive identification of the puberty-accelerating pheromone of the house mouse: the volatile ligands associating with the major urinary protein.

Authors:  M V Novotny; W Ma; D Wiesler; L Zídek
Journal:  Proc Biol Sci       Date:  1999-10-07       Impact factor: 5.349

2.  Conserved water molecules in a large family of microbial ribonucleases.

Authors:  R Loris; U Langhorst; S De Vos; K Decanniere; J Bouckaert; D Maes; T R Transue; J Steyaert
Journal:  Proteins       Date:  1999-07-01

Review 3.  Making cool drugs hot: isothermal titration calorimetry as a tool to study binding energetics.

Authors:  G A Holdgate
Journal:  Biotechniques       Date:  2001-07       Impact factor: 1.993

4.  Hydration effects in protein unfolding.

Authors:  G I Makhatadze; P L Privalov
Journal:  Biophys Chem       Date:  1994-08       Impact factor: 2.352

5.  A unique urinary constituent, 6-hydroxy-6-methyl-3-heptanone, is a pheromone that accelerates puberty in female mice.

Authors:  M V Novotny; B Jemiolo; D Wiesler; W Ma; S Harvey; F Xu; T M Xie; M Carmack
Journal:  Chem Biol       Date:  1999-06

6.  Thermodynamic analysis of binding between mouse major urinary protein-I and the pheromone 2-sec-butyl-4,5-dihydrothiazole.

Authors:  Scott D Sharrow; Milos V Novotny; Martin J Stone
Journal:  Biochemistry       Date:  2003-05-27       Impact factor: 3.162

7.  Energetics of interactions of aromatic hydrocarbons with water.

Authors:  G I Makhatadze; P L Privalov
Journal:  Biophys Chem       Date:  1994-06       Impact factor: 2.352

8.  Expression of six mouse major urinary protein genes in the mammary, parotid, sublingual, submaxillary, and lachrymal glands and in the liver.

Authors:  K Shahan; M Denaro; M Gilmartin; Y Shi; E Derman
Journal:  Mol Cell Biol       Date:  1987-05       Impact factor: 4.272

9.  Pheromone binding by polymorphic mouse major urinary proteins.

Authors:  Scott D Sharrow; Jeffrey L Vaughn; Lukás Zídek; Milos V Novotny; Martin J Stone
Journal:  Protein Sci       Date:  2002-09       Impact factor: 6.725

10.  Extraction, characterization, and binding analysis of two pheromonally active ligands associated with major urinary protein of house mouse (Mus musculus).

Authors:  D H Robertson; R J Beynon; R P Evershed
Journal:  J Chem Ecol       Date:  1993-07       Impact factor: 2.626

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  18 in total

1.  Long-timescale molecular-dynamics simulations of the major urinary protein provide atomistic interpretations of the unusual thermodynamics of ligand binding.

Authors:  Julie Roy; Charles A Laughton
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

2.  High resolution X-ray structures of mouse major urinary protein nasal isoform in complex with pheromones.

Authors:  Samantha Perez-Miller; Qin Zou; Milos V Novotny; Thomas D Hurley
Journal:  Protein Sci       Date:  2010-08       Impact factor: 6.725

3.  CIRSE: a solvation energy estimator compatible with flexible protein docking and design applications.

Authors:  David S Cerutti; Tushar Jain; J Andrew McCammon
Journal:  Protein Sci       Date:  2006-07       Impact factor: 6.725

4.  Conserved water molecules stabilize the Omega-loop in class A beta-lactamases.

Authors:  Fabian Bös; Jürgen Pleiss
Journal:  Antimicrob Agents Chemother       Date:  2008-01-14       Impact factor: 5.191

5.  Involvement of water in carbohydrate-protein binding: concanavalin A revisited.

Authors:  Renuka Kadirvelraj; B Lachele Foley; Jane D Dyekjaer; Robert J Woods
Journal:  J Am Chem Soc       Date:  2008-12-17       Impact factor: 15.419

6.  Role of interfacial water molecules in proline-rich ligand recognition by the Src homology 3 domain of Abl.

Authors:  Andres Palencia; Ana Camara-Artigas; M Teresa Pisabarro; Jose C Martinez; Irene Luque
Journal:  J Biol Chem       Date:  2009-11-10       Impact factor: 5.157

7.  Anesthetic interaction with ketosteroid isomerase: insights from molecular dynamics simulations.

Authors:  Michael J Yonkunas; Yan Xu; Pei Tang
Journal:  Biophys J       Date:  2005-07-22       Impact factor: 4.033

8.  Molecular dynamics study of the conformations of glycosidic linkages in sialic acid modified ganglioside GM3 analogues.

Authors:  G Jaishree; D Jeya Sundara Sharmila
Journal:  Glycoconj J       Date:  2014-06-10       Impact factor: 2.916

9.  Water mediated ligand functional group cooperativity: the contribution of a methyl group to binding affinity is enhanced by a COO(-) group through changes in the structure and thermodynamics of the hydration waters of ligand-thermolysin complexes.

Authors:  Nader N Nasief; Hongwei Tan; Jing Kong; David Hangauer
Journal:  J Med Chem       Date:  2012-09-19       Impact factor: 7.446

10.  Modulation of androgen receptor activation function 2 by testosterone and dihydrotestosterone.

Authors:  Emily B Askew; Robert T Gampe; Thomas B Stanley; Jonathan L Faggart; Elizabeth M Wilson
Journal:  J Biol Chem       Date:  2007-06-25       Impact factor: 5.157

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