Literature DB >> 15604105

Structural drift: a possible path to protein fold change.

S Sri Krishna1, Nick V Grishin.   

Abstract

SUMMARY: Along with their mutating sequences, protein structures change in time. Analyzing a formate dehydrogenase domain that is evolutionarily related to ferredoxin, but simultaneously contains all the structural elements of a beta-Grasp fold, we illustrate here a mechanism termed as structural drift, by which changes to a protein fold can occur. CONTACT: grishin@chop.swmed.edu.

Mesh：

Substances：

Year:  2004        PMID： 15604105     DOI： 10.1093/bioinformatics/bti227

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  33 in total

1.  Protein domain assignment from the recurrence of locally similar structures.

Authors:  Chin-Hsien Tai; Vichetra Sam; Jean-Francois Gibrat; Jean Garnier; Peter J Munson; Byungkook Lee
Journal:  Proteins       Date:  2010-12-22

2.  Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments.

Authors:  Lei Xie; Philip E Bourne
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-02       Impact factor: 11.205

3.  Structural relationships among proteins with different global topologies and their implications for function annotation strategies.

Authors:  Donald Petrey; Markus Fischer; Barry Honig
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-24       Impact factor: 11.205

4.  The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies.

Authors:  Alison L Cuff; Ian Sillitoe; Tony Lewis; Oliver C Redfern; Richard Garratt; Janet Thornton; Christine A Orengo
Journal:  Nucleic Acids Res       Date:  2008-11-07       Impact factor: 16.971

5.  Exploration of uncharted regions of the protein universe.

Authors:  Lukasz Jaroszewski; Zhanwen Li; S Sri Krishna; Constantina Bakolitsa; John Wooley; Ashley M Deacon; Ian A Wilson; Adam Godzik
Journal:  PLoS Biol       Date:  2009-09-29       Impact factor: 8.029

6.  Exploring protein structural dissimilarity to facilitate structure classification.

Authors:  Pooja Jain; Jonathan D Hirst
Journal:  BMC Struct Biol       Date:  2009-09-19

7.  Structural characteristics of novel protein folds.

Authors:  Narcis Fernandez-Fuentes; Joseph M Dybas; Andras Fiser
Journal:  PLoS Comput Biol       Date:  2010-04-22       Impact factor: 4.475

8.  The CATH hierarchy revisited-structural divergence in domain superfamilies and the continuity of fold space.

Authors:  Alison Cuff; Oliver C Redfern; Lesley Greene; Ian Sillitoe; Tony Lewis; Mark Dibley; Adam Reid; Frances Pearl; Tim Dallman; Annabel Todd; Richard Garratt; Janet Thornton; Christine Orengo
Journal:  Structure       Date:  2009-08-12       Impact factor: 5.006

9.  Tableau-based protein substructure search using quadratic programming.

Authors:  Alex Stivala; Anthony Wirth; Peter J Stuckey
Journal:  BMC Bioinformatics       Date:  2009-05-19       Impact factor: 3.169

10.  An atlas of the thioredoxin fold class reveals the complexity of function-enabling adaptations.

Authors:  Holly J Atkinson; Patricia C Babbitt
Journal:  PLoS Comput Biol       Date:  2009-10-23       Impact factor: 4.475
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.