Literature DB >> 15601889

A universal primer set for PCR amplification of nuclear histone H4 genes from all animal species.

Pascal Pineau1, Michel Henry, Rodolphe Suspène, Agnès Marchio, Agnès Dettai, Régis Debruyne, Thierry Petit, Alexis Lécu, Pierre Moisson, Anne Dejean, Simon Wain-Hobson, Jean-Pierre Vartanian.   

Abstract

To control the quality of genomic DNA of samples from a wide variety of animals, a heminested PCR assay specifically targeting a nuclear gene has been developed. The histone H4 gene family comprises a small number of genes considered among the most conserved genes in living organisms. Tissue samples from necropsies and from cells belonging to 43 different species were studied, eight samples from invertebrates and 35 samples from vertebrates covering all classes. Ancient DNA samples from three Siberian woolly mammoths (Mammuthus primigenius) dating between 40,000 and 49,000 years before present were also tested for PCR amplification. Performance of HIST2H4 amplification were also compared with those of previously published universal PCRs (28S rRNA, 18S rRNA, and cytochrome b). Overall, 95% of species studied yielded an amplification product, including some old samples from gorilla and chimpanzees. The data indicate that the HIST2H4 amplimers are, thus, suitable for both DNA quality testing as well as species identification in the animal kingdom.

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Year:  2004        PMID: 15601889     DOI: 10.1093/molbev/msi053

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  13 in total

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2.  Chromosome mapping of H3 and H4 histone gene clusters in 35 species of acridid grasshoppers.

Authors:  Josefa Cabrero; Ma Dolores López-León; María Teruel; Juan Pedro M Camacho
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3.  B chromosome ancestry revealed by histone genes in the migratory locust.

Authors:  María Teruel; Josefa Cabrero; Francisco Perfectti; Juan Pedro M Camacho
Journal:  Chromosoma       Date:  2009-12-17       Impact factor: 4.316

4.  Chromosomal evolutionary dynamics of four multigene families in Coreidae and Pentatomidae (Heteroptera) true bugs.

Authors:  Vanessa Bellini Bardella; José Antônio Marin Fernandes; Diogo Cavalcanti Cabral-de-Mello
Journal:  Mol Genet Genomics       Date:  2016-07-05       Impact factor: 3.291

5.  Insights into the karyotype evolution and speciation of the beetle Euchroma gigantea (Coleoptera: Buprestidae).

Authors:  Crislaine Xavier; Rógean Vinícius Santos Soares; Igor Costa Amorim; Diogo Cavalcanti Cabral-de-Mello; Rita de Cássia de Moura
Journal:  Chromosome Res       Date:  2018-03-09       Impact factor: 5.239

6.  Chromosomal organization of repetitive DNA sequences in Astyanax bockmanni (Teleostei, Characiformes): dispersive location, association and co-localization in the genome.

Authors:  Duílio M Z A Silva; José Carlos Pansonato-Alves; Ricardo Utsunomia; Sandro Natal Daniel; Diogo Teruo Hashimoto; Claudio Oliveira; Fabio Porto-Foresti; Fausto Foresti
Journal:  Genetica       Date:  2013-09-06       Impact factor: 1.082

7.  Karyotype analysis of the Russian wheat aphid, Diuraphis noxia (Kurdjumov) (Hemiptera: Aphididae) reveals a large X chromosome with rRNA and histone gene families.

Authors:  Jana Novotná; Jan Havelka; Petr Starý; Petr Koutecký; Magda Vítková
Journal:  Genetica       Date:  2011-02-19       Impact factor: 1.082

8.  Evolution of the primate APOBEC3A cytidine deaminase gene and identification of related coding regions.

Authors:  Michel Henry; Christophe Terzian; Martine Peeters; Simon Wain-Hobson; Jean-Pierre Vartanian
Journal:  PLoS One       Date:  2012-01-17       Impact factor: 3.240

9.  DNA barcoding for community ecology--how to tackle a hyperdiverse, mostly undescribed Melanesian fauna.

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Journal:  PLoS One       Date:  2012-01-13       Impact factor: 3.240

10.  Scattered organization of the histone multigene family and transposable elements in Synbranchus.

Authors:  Ricardo Utsunomia; José Carlos Pansonato-Alves; Priscilla Cardim Scacchetti; Claudio Oliveira; Fausto Foresti
Journal:  Genet Mol Biol       Date:  2013-02-28       Impact factor: 1.771

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