Literature DB >> 15600655

Efficient expansion, folding, and unfolding of proteins.

Erik D Nelson1, Nick V Grishin.   

Abstract

We consider a nonstatistical, computationally fast experiment to identify important topological constraints in folding small globular proteins of about 100-200 amino acids. In this experiment, proteins are expanded mechanically along a path of steepest increase in the free space around residues. The pathways are often consistent with folding scenarios reported in kinetics experiments and most accurately describe obligatory or mechanic folding proteins. The results suggest that certain topological "defects" in proteins lead to preferred, entropically favorable channels down their free energy landscapes.

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Year:  2004        PMID: 15600655     DOI: 10.1103/PhysRevE.70.051906

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  2 in total

1.  Folding domain B of protein A on a dynamically partitioned free energy landscape.

Authors:  Erik D Nelson; Nick V Grishin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-29       Impact factor: 11.205

2.  Cold adaptation of tRNA nucleotidyltransferases: A tradeoff in activity, stability and fidelity.

Authors:  Felix G M Ernst; Lieselotte Erber; Joana Sammler; Frank Jühling; Heike Betat; Mario Mörl
Journal:  RNA Biol       Date:  2017-11-21       Impact factor: 4.652

  2 in total

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