Literature DB >> 15598829

CARHTA GENE: multipopulation integrated genetic and radiation hybrid mapping.

Simon de Givry1, Martin Bouchez, Patrick Chabrier, Denis Milan, Thomas Schiex.   

Abstract

UNLABELLED: CAR(H)(T)A GENE: is an integrated genetic and radiation hybrid (RH) mapping tool which can deal with multiple populations, including mixtures of genetic and RH data. CAR(H)(T)A GENE: performs multipoint maximum likelihood estimations with accelerated expectation-maximization algorithms for some pedigrees and has sophisticated algorithms for marker ordering. Dedicated heuristics for framework mapping are also included. CAR(H)(T)A GENE: can be used as a C++ library, through a shell command and a graphical interface. The XML output for companion tools is integrated. AVAILABILITY: The program is available free of charge from www.inra.fr/bia/T/CarthaGene for Linux, Windows and Solaris machines (with Open Source). CONTACT: tschiex@toulouse.inra.fr.

Mesh：

Year:  2004        PMID： 15598829     DOI： 10.1093/bioinformatics/bti222

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  168 in total

1.  A high-resolution 15,000(Rad) radiation hybrid panel for the domestic cat.

Authors:  L H Bach; B Gandolfi; J C Grahn; L V Millon; M S Kent; K Narfstrom; S A Cole; J C Mullikin; R A Grahn; L A Lyons
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2.  Choice of models for QTL mapping with multiple families and design of the training set for prediction of Fusarium resistance traits in maize.

Authors:  Sen Han; H Friedrich Utz; Wenxin Liu; Tobias A Schrag; Michael Stange; Tobias Würschum; Thomas Miedaner; Eva Bauer; Chris-Carolin Schön; Albrecht E Melchinger
Journal:  Theor Appl Genet       Date:  2015-12-10       Impact factor: 5.699

3.  Trichome density of main stem is tightly linked to PepMoV resistance in chili pepper (Capsicum annuum L.).

Authors:  Hyun Jung Kim; Jung-Heon Han; Seungill Kim; Heung Ryul Lee; Jun-Sung Shin; Jeong-Ho Kim; Juok Cho; Young Ho Kim; Hee Jae Lee; Byung-Dong Kim; Doil Choi
Journal:  Theor Appl Genet       Date:  2010-12-24       Impact factor: 5.699

4.  Linkage analysis with an interbreed backcross maps Dalmatian hyperuricosuria to CFA03.

Authors:  Noa Safra; Robert H Schaible; Danika L Bannasch
Journal:  Mamm Genome       Date:  2006-04-04       Impact factor: 2.957

5.  Radiation hybrid map of the porcine genome comprising 2035 EST loci.

Authors:  Anette Rink; Katie Eyer; Benjamin Roelofs; Kimberly J Priest; Kathleen J Sharkey-Brockmeier; Sudkamon Lekhong; Elif K Karajusuf; Jason Bang; Martine Yerle; Denis Milan; Wan-Sheng Liu; Craig W Beattie
Journal:  Mamm Genome       Date:  2006-08-04       Impact factor: 2.957

6.  Genetic mapping in the presence of genotyping errors.

Authors:  Dustin A Cartwright; Michela Troggio; Riccardo Velasco; Alexander Gutin
Journal:  Genetics       Date:  2007-02-04       Impact factor: 4.562

7.  rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control.

Authors:  Alejandro A Schäffer; Edward Stallknecht Rice; William Cook; Richa Agarwala
Journal:  Bioinformatics       Date:  2007-03-01       Impact factor: 6.937

8.  Generation of an improved cytogenetic and comparative map of Bos taurus chromosome BTA27.

Authors:  Tom Goldammer; Ronald M Brunner; Rosemarie Weikard; Christa Kuehn; Klaus Wimmers
Journal:  Chromosome Res       Date:  2007-01-09       Impact factor: 5.239

9.  Genomic Regions From an Iranian Landrace Increase Kernel Size in Durum Wheat.

Authors:  Francesca Desiderio; Leila Zarei; Stefania Licciardello; Kianoosh Cheghamirza; Ezatollah Farshadfar; Nino Virzi; Fabiola Sciacca; Paolo Bagnaresi; Raffaella Battaglia; Davide Guerra; Massimo Palumbo; Luigi Cattivelli; Elisabetta Mazzucotelli
Journal:  Front Plant Sci       Date:  2019-04-18       Impact factor: 5.753

10.  Searching for novel sources of field resistance to Ug99 and Ethiopian stem rust races in durum wheat via association mapping.

Authors:  Tesfaye Letta; Marco Maccaferri; Ayele Badebo; Karim Ammar; Andrea Ricci; Jose Crossa; Roberto Tuberosa
Journal:  Theor Appl Genet       Date:  2013-02-21       Impact factor: 5.699
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