Literature DB >> 15598538

The modular xylanase Xyn10A from Rhodothermus marinus is cell-attached, and its C-terminal domain has several putative homologues among cell-attached proteins within the phylum Bacteroidetes.

Eva Nordberg Karlsson1, Maher Abou Hachem, Santosh Ramchuran, Hugo Costa, Olle Holst, Åsa Fex Svenningsen, Gudmundur O Hreggvidsson.   

Abstract

Until recently, the function of the fifth domain of the thermostable modular xylanase Xyn10A from Rhodothermus marinus was unresolved. A putative homologue to this domain was however identified in a mannanase (Man26A) from the same microorganism which raised questions regarding a common function. An extensive search of all accessible data-bases as well as the partially sequenced genomes of R. marinus and Cytophaga hutchinsonii showed that homologues of this domain were encoded by multiple genes in microorganisms in the phylum Bacteroidetes. Moreover, the domain occurred invariably at the C-termini of proteins that were predominantly extra-cellular/cell attached. A primary structure motif of three conserved regions including structurally important glycines and a proline was also identified suggesting a conserved 3D fold. This bioinformatic evidence suggested a possible role of this domain in mediating cell attachment. To confirm this theory, R. marinus was grown, and activity assays showed that the major part of the xylanase activity was connected to whole cells. Moreover, immunocytochemical detection using a Xyn10A-specific antibody proved presence of Xyn10A on the R. marinus cell surface. In the light of this, a revision of experimental data present on both Xyn10A and Man26A was performed, and the results all indicate a cell-anchoring role of the domain, suggesting that this domain represents a novel type of module that mediates cell attachment in proteins originating from members of the phylum Bacteroidetes.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15598538     DOI: 10.1016/j.femsle.2004.10.026

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN: 0378-1097            Impact factor:   2.742


  9 in total

1.  Biochemical and structural characterization of the complex agarolytic enzyme system from the marine bacterium Zobellia galactanivorans.

Authors:  Jan-Hendrik Hehemann; Gaëlle Correc; François Thomas; Thomas Bernard; Tristan Barbeyron; Murielle Jam; William Helbert; Gurvan Michel; Mirjam Czjzek
Journal:  J Biol Chem       Date:  2012-07-09       Impact factor: 5.157

2.  Complete genome sequence of the fish pathogen Flavobacterium branchiophilum.

Authors:  Marie Touchon; Paul Barbier; Jean-François Bernardet; Valentin Loux; Benoit Vacherie; Valérie Barbe; Eduardo P C Rocha; Eric Duchaud
Journal:  Appl Environ Microbiol       Date:  2011-09-16       Impact factor: 4.792

3.  Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii.

Authors:  Gary Xie; David C Bruce; Jean F Challacombe; Olga Chertkov; John C Detter; Paul Gilna; Cliff S Han; Susan Lucas; Monica Misra; Gerald L Myers; Paul Richardson; Roxanne Tapia; Nina Thayer; Linda S Thompson; Thomas S Brettin; Bernard Henrissat; David B Wilson; Mark J McBride
Journal:  Appl Environ Microbiol       Date:  2007-03-30       Impact factor: 4.792

4.  The RgpB C-terminal domain has a role in attachment of RgpB to the outer membrane and belongs to a novel C-terminal-domain family found in Porphyromonas gingivalis.

Authors:  Christine A Seers; Nada Slakeski; Paul D Veith; Todd Nikolof; Yu-Yen Chen; Stuart G Dashper; Eric C Reynolds
Journal:  J Bacteriol       Date:  2006-09       Impact factor: 3.490

5.  Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis.

Authors:  Mark J McBride; Gary Xie; Eric C Martens; Alla Lapidus; Bernard Henrissat; Ryan G Rhodes; Eugene Goltsman; Wei Wang; Jian Xu; David W Hunnicutt; Andrew M Staroscik; Timothy R Hoover; Yi-Qiang Cheng; Jennifer L Stein
Journal:  Appl Environ Microbiol       Date:  2009-08-28       Impact factor: 4.792

6.  Xylanase attachment to the cell wall of the hyperthermophilic bacterium Thermotoga maritima.

Authors:  Wolfgang Liebl; Christoph Winterhalter; Wolfgang Baumeister; Martin Armbrecht; Michael Valdez
Journal:  J Bacteriol       Date:  2007-12-14       Impact factor: 3.490

7.  Characterizing a Halo-Tolerant GH10 Xylanase from Roseithermus sacchariphilus Strain RA and Its CBM-Truncated Variant.

Authors:  Seng Chong Teo; Kok Jun Liew; Mohd Shahir Shamsir; Chun Shiong Chong; Neil C Bruce; Kok-Gan Chan; Kian Mau Goh
Journal:  Int J Mol Sci       Date:  2019-05-09       Impact factor: 5.923

8.  Characterization and diversity of the complete set of GH family 3 enzymes from Rhodothermus marinus DSM 4253.

Authors:  Kazi Zubaida Gulshan Ara; Anna Månberger; Marek Gabriško; Javier A Linares-Pastén; Andrius Jasilionis; Ólafur H Friðjónsson; Guðmundur Ó Hreggviðsson; Štefan Janeček; Eva Nordberg Karlsson
Journal:  Sci Rep       Date:  2020-01-28       Impact factor: 4.379

Review 9.  Thermostable Cellulases / Xylanases From Thermophilic and Hyperthermophilic Microorganisms: Current Perspective.

Authors:  Samaila Boyi Ajeje; Yun Hu; Guojie Song; Sunday Bulus Peter; Richmond Godwin Afful; Fubao Sun; Mohammad Ali Asadollahi; Hamid Amiri; Ali Abdulkhani; Haiyan Sun
Journal:  Front Bioeng Biotechnol       Date:  2021-12-15
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.