Literature DB >> 15596434

Regulation of aldoxime dehydratase activity by redox-dependent change in the coordination structure of the aldoxime-heme complex.

Katsuaki Kobayashi1, Shiro Yoshioka, Yasuo Kato, Yasuhisa Asano, Shigetoshi Aono.   

Abstract

Phenylacetaldoxime dehydratase from Bacillus sp. strain OxB-1 (OxdB) catalyzes the dehydration of Z-phenylacetaldoxime (PAOx) to produce phenylacetonitrile. OxdB contains a protoheme that works as the active center of the dehydration reaction. The enzymatic activity of ferrous OxdB was 1150-fold higher than that of ferric OxdB, indicating that the ferrous heme was the active state in OxdB catalysis. Although ferric OxdB was inactive, the substrate was bound to the ferric heme iron. Electron paramagnetic resonance spectroscopy revealed that the oxygen atom of PAOx was bound to the ferric heme, whereas PAOx was bound to the ferrous heme in OxdB via the nitrogen atom of PAOx. These results show a novel mechanism by which the activity of a heme enzyme is regulated; that is, the oxidation state of the heme controls the coordination structure of a substrate-heme complex, which regulates enzymatic activity. Rapid scanning spectroscopy using stopped-flow apparatus revealed that a reaction intermediate (the PAOx-ferrous OxdB complex) showed Soret, alpha, and beta bands at 415, 555, and 524 nM, respectively. The formation of this intermediate complex was very fast, finishing within the dead time of the stopped-flow mixer (approximately 3 ms). Site-directed mutagenesis revealed that His-306 was the catalytic residue responsible for assisting the elimination of the hydrogen atom of PAOx. The pH dependence of OxdB activity suggested that another amino acid residue that assists the elimination of the OH group of PAOx would work as a catalytic residue along with His-306.

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Year:  2004        PMID: 15596434     DOI: 10.1074/jbc.M410474200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  7 in total

1.  Crystal structure of aldoxime dehydratase and its catalytic mechanism involved in carbon-nitrogen triple-bond synthesis.

Authors:  Junpei Nomura; Hiroshi Hashimoto; Takehiro Ohta; Yoshiteru Hashimoto; Koichi Wada; Yoshinori Naruta; Ken-Ichi Oinuma; Michihiko Kobayashi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

2.  X-ray crystal structure of michaelis complex of aldoxime dehydratase.

Authors:  Hitomi Sawai; Hiroshi Sugimoto; Yasuo Kato; Yasuhisa Asano; Yoshitsugu Shiro; Shigetoshi Aono
Journal:  J Biol Chem       Date:  2009-09-08       Impact factor: 5.157

3.  X-ray-induced photoreduction of heme metal centers rapidly induces active-site perturbations in a protein-independent manner.

Authors:  Vera Pfanzagl; John H Beale; Hanna Michlits; Daniel Schmidt; Thomas Gabler; Christian Obinger; Kristina Djinović-Carugo; Stefan Hofbauer
Journal:  J Biol Chem       Date:  2020-07-28       Impact factor: 5.486

Review 4.  Understanding molecular enzymology of porphyrin-binding α + β barrel proteins - One fold, multiple functions.

Authors:  Stefan Hofbauer; Vera Pfanzagl; Hanna Michlits; Daniel Schmidt; Christian Obinger; Paul G Furtmüller
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2020-09-04       Impact factor: 3.036

5.  Programing a cyanide-free transformation of aldehydes to nitriles and one-pot synthesis of amides through tandem chemo-enzymatic cascades.

Authors:  Haoteng Zheng; Qinjie Xiao; Feiying Mao; Anming Wang; Mu Li; Qiuyan Wang; Pengfei Zhang; Xiaolin Pei
Journal:  RSC Adv       Date:  2022-06-16       Impact factor: 4.036

6.  Protein engineering of the aldoxime dehydratase from Bacillus sp. OxB-1 based on a rational sequence alignment approach.

Authors:  Keiko Oike; Jens Sproß; Daisuke Matsui; Yasuhisa Asano; Harald Gröger
Journal:  Sci Rep       Date:  2021-07-12       Impact factor: 4.379

7.  Synthetic Processes toward Nitriles without the Use of Cyanide: A Biocatalytic Concept Based on Dehydration of Aldoximes in Water.

Authors:  Alessa Hinzmann; Tobias Betke; Yasuhisa Asano; Harald Gröger
Journal:  Chemistry       Date:  2021-01-22       Impact factor: 5.236

  7 in total

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