Literature DB >> 15593407

ESTAP--an automated system for the analysis of EST data.

Chunhong Mao1, John C Cushman, Gregory D May, Jennifer W Weller.   

Abstract

The EST Analysis Pipeline (ESTAP) is a set of analytical procedures that automatically verify, cleanse, store and analyze ESTs generated on high-throughput platforms. It uses a relational database to store sequence data and analysis results, which facilitates both the search for specific information and statistical analysis. ESTAP provides for easy viewing of the original and cleansed data, as well as the analysis results via a Web browser. It also allows the data owner to submit selected sequences to dbEST in a semi-automated fashion.

Mesh：

Year:  2003        PMID： 15593407     DOI： 10.1093/bioinformatics/btg205

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  27 in total

1.  ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites.

Authors:  Li Li; Jonathan Crabtree; Steve Fischer; Deborah Pinney; Christian J Stoeckert; L David Sibley; David S Roos
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Immune-related genes associated with intestinal tissue in the sea cucumber Holothuria glaberrima.

Authors:  Francisco Ramírez-Gómez; Pablo A Ortíz-Pineda; Carmencita Rojas-Cartagena; Edna C Suárez-Castillo; José E García-Arrarás; José E García-Ararrás
Journal:  Immunogenetics       Date:  2007-12-19       Impact factor: 2.846

3.  Distinct profiles of expressed sequence tags during intestinal regeneration in the sea cucumber Holothuria glaberrima.

Authors:  Carmencita Rojas-Cartagena; Pablo Ortíz-Pineda; Francisco Ramírez-Gómez; Edna C Suárez-Castillo; Vanessa Matos-Cruz; Carlos Rodríguez; Humberto Ortíz-Zuazaga; José E García-Arrarás
Journal:  Physiol Genomics       Date:  2007-06-19       Impact factor: 3.107

4.  Transcriptome analysis of alfalfa glandular trichomes.

Authors:  Naveed Aziz; Nancy L Paiva; Gregory D May; Richard A Dixon
Journal:  Planta       Date:  2004-12-02       Impact factor: 4.116

5.  Sequencing, analysis, and annotation of expressed sequence tags for Camelus dromedarius.

Authors:  Abdulaziz M Al-Swailem; Maher M Shehata; Faisel M Abu-Duhier; Essam J Al-Yamani; Khalid A Al-Busadah; Mohammed S Al-Arawi; Ali Y Al-Khider; Abdullah N Al-Muhaimeed; Fahad H Al-Qahtani; Manee M Manee; Badr M Al-Shomrani; Saad M Al-Qhtani; Amer S Al-Harthi; Kadir C Akdemir; Mehmet S Inan; Hasan H Otu
Journal:  PLoS One       Date:  2010-05-19       Impact factor: 3.240

6.  Oomycete Transcriptomics Database: a resource for oomycete transcriptomes.

Authors:  Sucheta Tripathy; Tejal Deo; Brett M Tyler
Journal:  BMC Genomics       Date:  2012-07-06       Impact factor: 3.969

7.  Identification of tissue-specific, abiotic stress-responsive gene expression patterns in wine grape (Vitis vinifera L.) based on curation and mining of large-scale EST data sets.

Authors:  Richard L Tillett; Ali Ergül; Rebecca L Albion; Karen A Schlauch; Grant R Cramer; John C Cushman
Journal:  BMC Plant Biol       Date:  2011-05-18       Impact factor: 4.215

8.  ESMP: A high-throughput computational pipeline for mining SSR markers from ESTs.

Authors:  Ranjan Sarmah; Jagajjit Sahu; Budheswar Dehury; Kishore Sarma; Smita Sahoo; Mousumi Sahu; Madhumita Barooah; Priyabrata Sen; Mahendra Kumar Modi
Journal:  Bioinformation       Date:  2012-02-28

9.  CleanEST: a database of cleansed EST libraries.

Authors:  Byungwook Lee; Gwangsik Shin
Journal:  Nucleic Acids Res       Date:  2008-10-02       Impact factor: 16.971

10.  ESTPiper--a web-based analysis pipeline for expressed sequence tags.

Authors:  Zuojian Tang; Jeong-Hyeon Choi; Chris Hemmerich; Ankita Sarangi; John K Colbourne; Qunfeng Dong
Journal:  BMC Genomics       Date:  2009-04-21       Impact factor: 3.969
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