Literature DB >> 15593406

FindGDPs: identification of primers for labeling microbial transcriptomes for DNA microarray analysis.

Robert J Blick1, Andrew T Revel, Eric J Hansen.   

Abstract

FindGDPs is a program that uses a greedy algorithm to quickly identify a set of genome-directed primers that specifically anneal to all of the open reading frames ina genome and that do not exhibit full-length complementarity to the members of another user-supplied set of nucleotide sequences.

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Year:  2003        PMID： 15593406      PMCID： PMC2390821          DOI： 10.1093/bioinformatics/btg218

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  4 in total

1.  Genome-directed primers for selective labeling of bacterial transcripts for DNA microarray analysis.

Authors:  A M Talaat; P Hunter; S A Johnston
Journal:  Nat Biotechnol       Date:  2000-06       Impact factor: 54.908

2.  Exploring drug-induced alterations in gene expression in Mycobacterium tuberculosis by microarray hybridization.

Authors:  M Wilson; J DeRisi; H H Kristensen; P Imboden; S Rane; P O Brown; G K Schoolnik
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

3.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

4.  Priming reverse transcription with oligo(dT) does not yield representative samples of Mycobacterium tuberculosis cDNA.

Authors:  David L Lakey; Yueru Zhang; Adel M Talaat; Buka Samten; Lucy E DesJardin; Kathleen D Eisenach; Stephen A Johnston; Peter F Barnes
Journal:  Microbiology       Date:  2002-08       Impact factor: 2.777
  4 in total
  5 in total

1.  Identification of Francisella tularensis genes affected by iron limitation.

Authors:  Kaiping Deng; Robert J Blick; Wei Liu; Eric J Hansen
Journal:  Infect Immun       Date:  2006-07       Impact factor: 3.441

2.  Regulation of expression of the Haemophilus ducreyi LspB and LspA2 proteins by CpxR.

Authors:  Maria Labandeira-Rey; Jason R Mock; Eric J Hansen
Journal:  Infect Immun       Date:  2009-05-18       Impact factor: 3.441

3.  Metabolic analysis of Moraxella catarrhalis and the effect of selected in vitro growth conditions on global gene expression.

Authors:  Wei Wang; Larry Reitzer; David A Rasko; Melanie M Pearson; Robert J Blick; Cassie Laurence; Eric J Hansen
Journal:  Infect Immun       Date:  2007-07-09       Impact factor: 3.441

4.  Genome-wide selection of unique and valid oligonucleotides.

Authors:  Heikki Hyyrö; Martti Juhola; Mauno Vihinen
Journal:  Nucleic Acids Res       Date:  2005-07-26       Impact factor: 16.971

5.  An evaluation of custom microarray applications: the oligonucleotide design challenge.

Authors:  Sophie Lemoine; Florence Combes; Stéphane Le Crom
Journal:  Nucleic Acids Res       Date:  2009-02-10       Impact factor: 16.971
  5 in total

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