Literature DB >> 15585525

CLUSTAG: hierarchical clustering and graph methods for selecting tag SNPs.

S I Ao1, Kevin Yip, Michael Ng, David Cheung, Pui-Yee Fong, Ian Melhado, Pak C Sham.   

Abstract

UNLABELLED: Cluster and set-cover algorithms are developed to obtain a set of tag single nucleotide polymorphisms (SNPs) that can represent all the known SNPs in a chromosomal region, subject to the constraint that all SNPs must have a squared correlation R2>C with at least one tag SNP, where C is specified by the user. AVAILABILITY: http://hkumath.hku.hk/web/link/CLUSTAG/CLUSTAG.html CONTACT: mng@maths.hku.hk.

Mesh：

Year:  2004        PMID： 15585525     DOI： 10.1093/bioinformatics/bti201

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  12 in total

1.  Efficient selection of tagging single-nucleotide polymorphisms in multiple populations.

Authors:  Bryan N Howie; Christopher S Carlson; Mark J Rieder; Deborah A Nickerson
Journal:  Hum Genet       Date:  2006-05-06       Impact factor: 4.132

2.  Sequential Support Vector Regression with Embedded Entropy for SNP Selection and Disease Classification.

Authors:  Yulan Liang; Arpad Kelemen
Journal:  Stat Anal Data Min       Date:  2011-06-01       Impact factor: 1.051

3.  Clinical fracture risk evaluated by hierarchical agglomerative clustering.

Authors:  C Kruse; P Eiken; P Vestergaard
Journal:  Osteoporos Int       Date:  2016-11-16       Impact factor: 4.507

4.  Informative SNP Selection Based on a Fuzzy Clustering and Improved Binary Particle Swarm Optimization Algorithm.

Authors:  Zejun Li; Li Ang; Wei Shi; Ning Xin; Min Chen; Hua Tang
Journal:  Comput Math Methods Med       Date:  2022-06-16       Impact factor: 2.809

5.  Hierarchical Clustering With Prototypes via Minimax Linkage.

Authors:  Jacob Bien; Robert Tibshirani
Journal:  J Am Stat Assoc       Date:  2011       Impact factor: 5.033

6.  Fine mapping of the NRG1 Hirschsprung's disease locus.

Authors:  Clara Sze-Man Tang; Wai-Kiu Tang; Man-Ting So; Xiao-Ping Miao; Brian Man-Chun Leung; Benjamin Hon-Kei Yip; Thomas Yuk-Yu Leon; Elly Sau-Wai Ngan; Vincent Chi-Hang Lui; Yan Chen; Ivy Hau-Yee Chan; Patrick Ho-Yu Chung; Xue-Lai Liu; Xuan-Zhao Wu; Kenneth Kak-Yuen Wong; Pak-Chung Sham; Stacey S Cherny; Paul Kwong-Hang Tam; Maria-Mercè Garcia-Barceló
Journal:  PLoS One       Date:  2011-01-20       Impact factor: 3.240

7.  Establishing multiple omics baselines for three Southeast Asian populations in the Singapore Integrative Omics Study.

Authors:  Woei-Yuh Saw; Erwin Tantoso; Husna Begum; Lihan Zhou; Ruiyang Zou; Cheng He; Sze Ling Chan; Linda Wei-Lin Tan; Lai-Ping Wong; Wenting Xu; Don Kyin Nwe Moong; Yenly Lim; Bowen Li; Nisha Esakimuthu Pillai; Trevor A Peterson; Tomasz Bielawny; Peter J Meikle; Piyushkumar A Mundra; Wei-Yen Lim; Ma Luo; Kee-Seng Chia; Rick Twee-Hee Ong; Liam R Brunham; Chiea-Chuen Khor; Heng Phon Too; Richie Soong; Markus R Wenk; Peter Little; Yik-Ying Teo
Journal:  Nat Commun       Date:  2017-09-21       Impact factor: 14.919

8.  Seq4SNPs: new software for retrieval of multiple, accurately annotated DNA sequences, ready formatted for SNP assay design.

Authors:  Helen I Field; Serena A Scollen; Craig Luccarini; Caroline Baynes; Jonathan Morrison; Alison M Dunning; Douglas F Easton; Paul D P Pharoah
Journal:  BMC Bioinformatics       Date:  2009-06-12       Impact factor: 3.169

9.  CGTS: a site-clustering graph based tagSNP selection algorithm in genotype data.

Authors:  Jun Wang; Mao-zu Guo; Chun-yu Wang
Journal:  BMC Bioinformatics       Date:  2009-01-30       Impact factor: 3.169

Review 10.  SNP Discovery Using a Pangenome: Has the Single Reference Approach Become Obsolete?

Authors:  Bhavna Hurgobin; David Edwards
Journal:  Biology (Basel)       Date:  2017-03-11
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