Literature DB >> 15582401

Structural insights into protein-metal ion partnerships.

David P Barondeau1, Elizabeth D Getzoff.   

Abstract

New metalloprotein structures continue to provide discoveries regarding protein-metal ion partnerships. Many recent structures reveal metal ion sites that control or are controlled by protein conformational change, including modulation by alternative splice variants and striking conformational changes. Only a few novel catalytic metal centers have been revealed recently, such as the surprising Ni-hook superoxide dismutase catalytic site and the cubane-like Mn(3)CaO(4) photosynthetic oxygen-evolving center. However, important new variations on old heme themes, breakthroughs in the fields of metal ion regulation and metallochaperones, and captivating insights into partnerships between proteins and minerals have also been described. Very high resolution metal site structures and metalloprotein design will be increasingly important in order to leverage the wealth of native metalloprotein structures into a deep understanding of metal ion site specificity and activity.

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Year:  2004        PMID: 15582401     DOI: 10.1016/j.sbi.2004.10.012

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  19 in total

1.  Interfacial metal and antibody recognition.

Authors:  Tongqing Zhou; Dean H Hamer; Wayne A Hendrickson; Quentin J Sattentau; Peter D Kwong
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-29       Impact factor: 11.205

2.  Site-specific fluorescent labeling of poly-histidine sequences using a metal-chelating cysteine.

Authors:  Beena Krishnan; Aneta Szymanska; Lila M Gierasch
Journal:  Chem Biol Drug Des       Date:  2007-01       Impact factor: 2.817

3.  FINDSITE-metal: integrating evolutionary information and machine learning for structure-based metal-binding site prediction at the proteome level.

Authors:  Michal Brylinski; Jeffrey Skolnick
Journal:  Proteins       Date:  2010-12-06

4.  Structural and functional characterization of an orphan ATP-binding cassette ATPase involved in manganese utilization and tolerance in Leptospira spp.

Authors:  Nadia Benaroudj; Frederick Saul; Jacques Bellalou; Isabelle Miras; Patrick Weber; Vincent Bondet; Gerald L Murray; Ben Adler; Paula Ristow; Hélène Louvel; Ahmed Haouz; Mathieu Picardeau
Journal:  J Bacteriol       Date:  2013-10-11       Impact factor: 3.490

5.  Protease digestion analysis of Escherichia coli NikR: evidence for conformational stabilization with Ni(II).

Authors:  Alistair V Dias; Deborah B Zamble
Journal:  J Biol Inorg Chem       Date:  2005-11-02       Impact factor: 3.358

6.  Predicting the disruption by UO2(2+) of a protein-ligand interaction.

Authors:  Olivier Pible; Claude Vidaud; Sophie Plantevin; Jean-Luc Pellequer; Eric Quéméneur
Journal:  Protein Sci       Date:  2010-11       Impact factor: 6.725

7.  Manganese binds to Clostridium difficile Fbp68 and is essential for fibronectin binding.

Authors:  Yi-Pin Lin; Chih-Jung Kuo; Xhelil Koleci; Sean P McDonough; Yung-Fu Chang
Journal:  J Biol Chem       Date:  2010-11-09       Impact factor: 5.157

8.  Conformational changes associated with the binding of zinc acetate at the putative active site of XcTcmJ, a cupin from Xanthomonas campestris pv. campestris.

Authors:  Herbert L Axelrod; Piotr Kozbial; Daniel McMullan; S Sri Krishna; Mitchell D Miller; Polat Abdubek; Claire Acosta; Tamara Astakhova; Dennis Carlton; Jonathan Caruthers; Hsiu Ju Chiu; Thomas Clayton; Marc C Deller; Lian Duan; Ylva Elias; Julie Feuerhelm; Slawomir K Grzechnik; Joanna C Grant; Gye Won Han; Lukasz Jaroszewski; Kevin K Jin; Heath E Klock; Mark W Knuth; Abhinav Kumar; David Marciano; Andrew T Morse; Kevin D Murphy; Edward Nigoghossian; Linda Okach; Silvya Oommachen; Jessica Paulsen; Ron Reyes; Christopher L Rife; Henry J Tien; Christina V Trout; Henry van den Bedem; Dana Weekes; Aprilfawn White; Qingping Xu; Chloe Zubieta; Keith O Hodgson; John Wooley; Marc André Elsliger; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-10-27

9.  Binding of the Zn2+ ion to ferric uptake regulation protein from E. coli and the competition with Fe2+ binding: a molecular modeling study of the effect on DNA binding and conformational changes of Fur.

Authors:  Salih Jabour; Mazen Y Hamed
Journal:  J Comput Aided Mol Des       Date:  2008-11-21       Impact factor: 3.686

10.  Fibulin-1 purification from human plasma using affinity chromatography on Factor H-Sepharose.

Authors:  Richard G DiScipio; Robert C Liddington; Ingrid U Schraufstatter
Journal:  Protein Expr Purif       Date:  2016-01-28       Impact factor: 1.650

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