Literature DB >> 15581373

The early steps in the unfolding of azurin.

Bruno Rizzuti1, Valerie Daggett, Rita Guzzi, Luigi Sportelli.   

Abstract

High-temperature molecular dynamics simulations were used to gain insight into the early steps in the unfolding pathway of azurin, a blue copper protein with a beta-barrel structure formed by two sheets arranged in a Greek key folding topology. The results reveal that unfolding of the beta-barrel in azurin is associated with dislocation of its unique alpha-helix with respect to the protein scaffold. Exposure of the hydrophobic core to solvent precedes complete disruption of secondary and tertiary structure, and modifications in the region around the active site are directly connected with this event. Denaturation of the protein initiates from the sheet coordinating the copper ion, and the other sheet maintains its topology. Results derived from the simulation were compared with experimental data obtained with different techniques, showing excellent agreement and providing a framework to understand the process of disruption and formation of the beta-barrel in azurin.

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Year:  2004        PMID: 15581373     DOI: 10.1021/bi048685t

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

1.  An alternative flexible conformation of the E. coli HUβ₂ protein: structural, dynamics, and functional aspects.

Authors:  Norbert Garnier; Karine Loth; Franck Coste; Rafal Augustyniak; Virginie Nadan; Christian Damblon; Bertrand Castaing
Journal:  Eur Biophys J       Date:  2010-10-10       Impact factor: 1.733

2.  Dynamics and unfolding pathway of chimeric azurin variants: insights from molecular dynamics simulation.

Authors:  Stefania Evoli; Rita Guzzi; Bruno Rizzuti
Journal:  J Biol Inorg Chem       Date:  2013-07-10       Impact factor: 3.358

3.  A Euclidean Perspective on the Unfolding of Azurin: Spatial Correlations.

Authors:  Jeffrey J Warren; Harry B Gray; Jay R Winkler; John J Kozak
Journal:  Mol Phys       Date:  2013-04-01       Impact factor: 1.962

Review 4.  Using simulations to provide the framework for experimental protein folding studies.

Authors:  Bruno Rizzuti; Valerie Daggett
Journal:  Arch Biochem Biophys       Date:  2012-12-22       Impact factor: 4.013

5.  Cytochrome unfolding pathways from computational analysis of crystal structures.

Authors:  John J Kozak; Harry B Gray; Roberto A Garza-López
Journal:  J Inorg Biochem       Date:  2015-11-10       Impact factor: 4.155

6.  A Euclidean perspective on the unfolding of azurin: chain motion.

Authors:  Harry B Gray; Jeffery J Warren; Jay R Winkler; John J Kozak
Journal:  J Biol Inorg Chem       Date:  2013-12-31       Impact factor: 3.358

7.  The mechanochemistry of copper reports on the directionality of unfolding in model cupredoxin proteins.

Authors:  Amy E M Beedle; Ainhoa Lezamiz; Guillaume Stirnemann; Sergi Garcia-Manyes
Journal:  Nat Commun       Date:  2015-08-03       Impact factor: 14.919

  7 in total

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