Literature DB >> 15579973

6-Aza-2'-deoxy-2'-arabinofluorouridine, a 2'-deoxyribonucleoside with an N-sugar conformation in the solid state and in solution.

Frank Seela1, Padmaja Chittepu, Junlin He, Henning Eickmeier.   

Abstract

In the title compound, 2-(2-deoxy-2-fluoro-beta-D-arabinofuranosyl)-1,2,4-triazine-3,5(2H,4H)-dione, C(8)H(10)FN(3)O(5), the torsion angle of the N-glycosylic bond is anti [chi = -125.37 (13) degrees]. The furanose moiety adopts the N-type sugar pucker ((3)T(2)), with P = 359.2 degrees and tau(m) = 31.4 degrees. The conformation around the C4'-C5' bond is antiperiplanar (trans), with a torsion angle gamma of 177.00 (11) degrees. A network is formed via hydrogen bonds from the nucleobases to the sugar residues, as well as through hydrogen bonds between the sugar moieties.

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Year:  2004        PMID: 15579973     DOI: 10.1107/S0108270104023649

Source DB:  PubMed          Journal:  Acta Crystallogr C        ISSN: 0108-2701            Impact factor:   1.172


  1 in total

1.  Comprehensive structural studies of 2',3'-difluorinated nucleosides: comparison of theory, solution, and solid state.

Authors:  Joseph J Barchi; Rajeshri G Karki; Marc C Nicklaus; Maqbool A Siddiqui; Clifford George; Igor A Mikhailopulo; Victor E Marquez
Journal:  J Am Chem Soc       Date:  2008-06-18       Impact factor: 15.419

  1 in total

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