Literature DB >> 15578242

The metal bonding domain of the antitumor drug Fe(II)-bleomycin: a DFT investigation.

Anna Karawajczyk1, Francesco Buda.   

Abstract

The geometric and electronic structure of ferrous complexes of bleomycin (Fe(II)BLM) has been investigated by means of density functional theory (DFT) calculations. The active site of this antitumor drug is a highly distorted octahedral complex, with the coordination sphere completed by the five known endogenous ligands, including pyrimidine, imidazole, deprotonated amide, and secondary and primary amines. We have addressed the controversial issue of the nature of the sixth axial ligand, which we have identified as the oxygen of the carbamoyl group. Our conclusions are further validated by a comparison with structural data derived from NMR experiments. Moreover, because of the high sensitivity of structural data on the pH of the environment, we have investigated the effect of a different protonation state of the histidine amide on the geometric structure of the Fe(II)BLM complex. The extensive model of the active site of bleomycin considered in this work allows us to check the limitations of previous investigations based on simplified models.

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Year:  2004        PMID: 15578242     DOI: 10.1007/s00775-004-0610-8

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  14 in total

1.  Cleavage of Nucleic Acids by Bleomycin.

Authors:  Richard M. Burger
Journal:  Chem Rev       Date:  1998-05-07       Impact factor: 60.622

2.  Coordination chemistry of co(II)-bleomycin: its investigation through NMR and molecular dynamics.

Authors:  T E Lehmann; M L Serrano; L Que
Journal:  Biochemistry       Date:  2000-04-11       Impact factor: 3.162

3.  Structural studies of of "active complex" of bleomycin: assignment of ligands to the ferrous ion in a ferrous-bleomycin-carbon monoxide complex.

Authors:  N J Oppenheimer; L O Rodriguez; S M Hecht
Journal:  Proc Natl Acad Sci U S A       Date:  1979-11       Impact factor: 11.205

4.  Conformational/configurational analysis of all the binding geometries of cobalt(III) bleomycin.

Authors:  F Fedeles; M Zimmer
Journal:  Inorg Chem       Date:  2001-03-26       Impact factor: 5.165

5.  Molecular modeling of the three-dimensional structure of Fe(II)-bleomycin: are the Co(II) and Fe(II) adducts isostructural?

Authors:  Teresa E Lehmann
Journal:  J Biol Inorg Chem       Date:  2001-10-12       Impact factor: 3.358

6.  The 1.6-A crystal structure of the copper(II)-bound bleomycin complexed with the bleomycin-binding protein from bleomycin-producing Streptomyces verticillus.

Authors:  Masanori Sugiyama; Takanori Kumagai; Minoru Hayashida; Masafumi Maruyama; Yasuyuki Matoba
Journal:  J Biol Chem       Date:  2001-11-12       Impact factor: 5.157

7.  Structures of HO(2)-Co(III)bleomycin A(2) bound to d(GAGCTC)(2) and d(GGAAGCTTCC)(2): structure-reactivity relationships of Co and Fe bleomycins.

Authors:  Chunqing Zhao; Chuanwu Xia; Qunkai Mao; Holger Försterling; Eugene DeRose; William E Antholine; Witold K Subczynski; David H Petering
Journal:  J Inorg Biochem       Date:  2002-07-25       Impact factor: 4.155

8.  Electronic structure and reactivity of low-spin Fe(III)-hydroperoxo complexes: comparison to activated bleomycin.

Authors:  Nicolai Lehnert; Frank Neese; Raymond Y N Ho; Lawrence Que; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2002-09-11       Impact factor: 15.419

9.  Activated bleomycin. A transient complex of drug, iron, and oxygen that degrades DNA.

Authors:  R M Burger; J Peisach; S B Horwitz
Journal:  J Biol Chem       Date:  1981-11-25       Impact factor: 5.157

10.  Axial ligation of Fe(II)-bleomycin probed by XANES spectroscopy.

Authors:  Grigory Smolentsev; Alexander V Soldatov; Erik C Wasinger; Edward I Solomon
Journal:  Inorg Chem       Date:  2004-03-22       Impact factor: 5.165

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  2 in total

1.  Effect of mutation on the stabilization energy of HIV-1 zinc fingers: a hybrid local self-consistent field/molecular mechanics investigation.

Authors:  Nedjoua Drici; Mohamed Abdelghani Krallafa
Journal:  J Biol Inorg Chem       Date:  2016-11-15       Impact factor: 3.358

Review 2.  Air pollutants disrupt iron homeostasis to impact oxidant generation, biological effects, and tissue injury.

Authors:  Andrew J Ghio; Joleen M Soukup; Lisa A Dailey; Michael C Madden
Journal:  Free Radic Biol Med       Date:  2020-02-21       Impact factor: 7.376

  2 in total

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