Literature DB >> 15576678

RNA silencing in plants by the expression of siRNA duplexes.

Shanfa Lu1, Rui Shi, Cheng-Chung Tsao, Xiaoping Yi, Laigeng Li, Vincent L Chiang.   

Abstract

In animal cells, stable RNA silencing can be achieved by vector-based small interfering RNA (siRNA) expression system, in which Pol III RNA gene promoters are used to drive the expression of short hairpin RNA, however, this has not been demonstrated in plants. Whether Pol III RNA gene promoter is capable of driving siRNA expression in plants is unknown. Here, we report that RNA silencing was achieved in plants through stable expression of short hairpin RNA, which was driven by Pol III RNA gene promoters. Using glucuronidase (GUS) transformed tobacco as a model system, the results demonstrated that 21 nt RNA duplexes, targeting at different sites of GUS gene, were stably expressed under the control of either human H1 or Arabidopsis 7SL RNA gene promoter, and GUS gene was silenced in 80% of siRNA transgenics. The severity of silencing was correlated with the abundance of siRNA expression but independent of the target sites and uridine residue structures in siRNA hairpin transcripts. Thus, the specific expression of siRNA provides a new system for the study of siRNA silencing pathways and functional genomics in plants. Moreover, the effectiveness of the human H1 promoter in a plant background suggested a conserved mechanism underlying Pol III complex functionality.

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Year:  2004        PMID: 15576678      PMCID: PMC535699          DOI: 10.1093/nar/gnh170

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  51 in total

1.  Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells.

Authors:  Patrick J Paddison; Amy A Caudy; Emily Bernstein; Gregory J Hannon; Douglas S Conklin
Journal:  Genes Dev       Date:  2002-04-15       Impact factor: 11.361

Review 2.  RNA interference.

Authors:  Gregory J Hannon
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 3.  RNA silencing: small RNAs as ubiquitous regulators of gene expression.

Authors:  Olivier Voinnet
Journal:  Curr Opin Plant Biol       Date:  2002-10       Impact factor: 7.834

4.  The specifics of small interfering RNA specificity.

Authors:  Andrew Dillin
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-16       Impact factor: 11.205

Review 5.  Exploring plant genomes by RNA-induced gene silencing.

Authors:  Peter M Waterhouse; Christopher A Helliwell
Journal:  Nat Rev Genet       Date:  2003-01       Impact factor: 53.242

6.  Suppression of Virus Accumulation in Transgenic Plants Exhibiting Silencing of Nuclear Genes.

Authors:  J. J. English; E. Mueller; D. C. Baulcombe
Journal:  Plant Cell       Date:  1996-02       Impact factor: 11.277

7.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

8.  Expression of small interfering RNAs targeted against HIV-1 rev transcripts in human cells.

Authors:  Nan Sook Lee; Taikoh Dohjima; Gerhard Bauer; Haitang Li; Ming-Jie Li; Ali Ehsani; Paul Salvaterra; John Rossi
Journal:  Nat Biotechnol       Date:  2002-05       Impact factor: 54.908

9.  Two classes of small antisense RNAs in fungal RNA silencing triggered by non-integrative transgenes.

Authors:  Francisco E Nicolás; Santiago Torres-Martínez; Rosa M Ruiz-Vázquez
Journal:  EMBO J       Date:  2003-08-01       Impact factor: 11.598

10.  Analysis of gene function in somatic mammalian cells using small interfering RNAs.

Authors:  Sayda M Elbashir; Jens Harborth; Klaus Weber; Thomas Tuschl
Journal:  Methods       Date:  2002-02       Impact factor: 3.608

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  12 in total

1.  Silencing potential of viral derived RNAi constructs in Tomato leaf curl virus-AC4 gene suppression in tomato.

Authors:  Shelly Praveen; S V Ramesh; Anil K Mishra; Vikas Koundal; Peter Palukaitis
Journal:  Transgenic Res       Date:  2009-06-23       Impact factor: 2.788

2.  The Quest to Understand the Basis and Mechanisms that Control Expression of Introduced Transgenes in Crop Plants.

Authors:  Ajay Kohli; Pablo Gonzalez Melendi; Rita Abranches; Teresa Capell; Eva Stoger; Paul Christou
Journal:  Plant Signal Behav       Date:  2006-07

3.  Hairpin RNAs derived from RNA polymerase II and polymerase III promoter-directed transgenes are processed differently in plants.

Authors:  Ming-Bo Wang; Christopher A Helliwell; Li-Min Wu; Peter M Waterhouse; W James Peacock; Elizabeth S Dennis
Journal:  RNA       Date:  2008-03-26       Impact factor: 4.942

4.  Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis.

Authors:  Shanfa Lu; Ying-Hsuan Sun; Rui Shi; Catherine Clark; Laigeng Li; Vincent L Chiang
Journal:  Plant Cell       Date:  2005-07-01       Impact factor: 11.277

5.  Control of brown patch (Rhizoctonia solani) in tall fescue (Festuca arundinacea Schreb.) by host induced gene silencing.

Authors:  Binbin Zhou; Ana Bailey; C L Niblett; Rongda Qu
Journal:  Plant Cell Rep       Date:  2016-01-22       Impact factor: 4.570

6.  RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence: Wall Associated Kinases from Oryza sativa.

Authors:  Vydehi Kanneganti; Aditya Kumar Gupta
Journal:  Physiol Mol Biol Plants       Date:  2011-01-21

7.  Artificial microRNA-mediated virus resistance in plants.

Authors:  Jing Qu; Jian Ye; Rongxiang Fang
Journal:  J Virol       Date:  2007-03-07       Impact factor: 5.103

8.  Silencing of Plum pox virus 5'UTR/P1 sequence confers resistance to a wide range of PPV strains.

Authors:  Elisa Di Nicola-Negri; Mario Tavazza; Laura Salandri; Vincenza Ilardi
Journal:  Plant Cell Rep       Date:  2010-10-21       Impact factor: 4.964

Review 9.  Biotechnological strategies and tools for Plum pox virus resistance: trans-, intra-, cis-genesis, and beyond.

Authors:  Vincenza Ilardi; Mario Tavazza
Journal:  Front Plant Sci       Date:  2015-06-08       Impact factor: 5.753

10.  RNA-CODE: a noncoding RNA classification tool for short reads in NGS data lacking reference genomes.

Authors:  Cheng Yuan; Yanni Sun
Journal:  PLoS One       Date:  2013-10-25       Impact factor: 3.240

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