Literature DB >> 1557379

Symmetry conditions for binding processes.

E Di Cera1, K P Hopfner, J Wyman.   

Abstract

Symmetry conditions are derived for global and local binding processes in biological macromolecules. It is shown that the conditions applying in the case of the macromolecule as a whole are decoupled from those referring to individual sites. In the case of two sites, the global binding curve is always symmetric, and the individual-site binding curves are always asymmetric, unless the two sites are identical or independent. In the case of three sites or more, individual-site binding curves can show symmetric or asymmetric behavior. The conditions derived for symmetry in the local description of binding processes also apply to the case of linkage among different ligands and to steady-state kinetics. Application to the analysis of oxygen binding to human hemoglobin under physiological conditions provides a model-independent interpretation of the asymmetric nature of the binding curve. Asymmetry of the global binding curve can coexist with symmetric or asymmetric binding to the individual alpha and beta chains. If the binding curves of the two chains are symmetric, then subunit heterogeneity and asymmetric interactions must exist in the hemoglobin tetramer. On the other hand, if the binding curves of the two chains are asymmetric, then subunit heterogeneity and asymmetric interactions are not necessary for global asymmetric binding.

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Year:  1992        PMID: 1557379      PMCID: PMC48735          DOI: 10.1073/pnas.89.7.2727

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  12 in total

1.  Global and local metric geometry of ligand binding thermodynamics.

Authors:  E Di Cera; J Wyman
Journal:  Proc Natl Acad Sci U S A       Date:  1991-04-15       Impact factor: 11.205

Review 2.  LINKED FUNCTIONS AND RECIPROCAL EFFECTS IN HEMOGLOBIN: A SECOND LOOK.

Authors:  J WYMAN
Journal:  Adv Protein Chem       Date:  1964

3.  The determination of the individual equilibrium constants of the four intermediate reactions between oxygen and sheep haemoglobin.

Authors:  F J ROUGHTON; A B OTIS; R L LYSTER
Journal:  Proc R Soc Lond B Biol Sci       Date:  1955-08-16

4.  The Oxygen Equilibrium of Hemoglobin and Its Structural Interpretation.

Authors:  L Pauling
Journal:  Proc Natl Acad Sci U S A       Date:  1935-04       Impact factor: 11.205

5.  Effect of protons on the amidase activity of human alpha-thrombin. Analysis in terms of a general linkage scheme.

Authors:  R De Cristofaro; E Di Cera
Journal:  J Mol Biol       Date:  1990-12-20       Impact factor: 5.469

6.  Thermodynamics of local linkage effects. Contracted partition functions and the analysis of site-specific energetics.

Authors:  E Di Cera
Journal:  Biophys Chem       Date:  1990-08-31       Impact factor: 2.352

Review 7.  Mechanisms of cooperativity and allosteric regulation in proteins.

Authors:  M F Perutz
Journal:  Q Rev Biophys       Date:  1989-05       Impact factor: 5.318

8.  Cooperative deoxygenation of haemoglobin: asymmetry of binding and subunit differences.

Authors:  L Peller
Journal:  Nature       Date:  1982-12-16       Impact factor: 49.962

9.  Comparison of experimental binding data and theoretical models in proteins containing subunits.

Authors:  D E Koshland; G Némethy; D Filmer
Journal:  Biochemistry       Date:  1966-01       Impact factor: 3.162

10.  Carbon monoxide and oxygen binding to human hemoglobin F0.

Authors:  E Di Cera; M L Doyle; M S Morgan; R De Cristofaro; R Landolfi; B Bizzi; M Castagnola; S J Gill
Journal:  Biochemistry       Date:  1989-03-21       Impact factor: 3.162

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  2 in total

1.  Transition modes in Ising networks: an approximate theory for macromolecular recognition.

Authors:  S Keating; E Di Cera
Journal:  Biophys J       Date:  1993-07       Impact factor: 4.033

2.  The binding capacity is a probability density function.

Authors:  E Di Cera; Z Q Chen
Journal:  Biophys J       Date:  1993-07       Impact factor: 4.033

  2 in total

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