Literature DB >> 15573415

Computer simulation of flagellar movement IX. Oscillation and symmetry breaking in a model for short flagella and nodal cilia.

Charles J Brokaw1.   

Abstract

A computer model of flagella in which oscillation results from regulation of active sliding force by sliding velocity can simulate the movements of very short flagella and cilia. Of particular interest are the movements of the short (2-3 microm) nodal cilia of the mammalian embryo, which determine the development of the asymmetry of the internal organs. These cilia must generate a counterclockwise (viewed from base to tip) circling motion. A three-dimensional computer model, with active force generated by a simple mathematical formulation and regulated by sliding velocity, can generate this circling motion if a time delay process is included in the control specification. Without the introduction of a symmetry-breaking mechanism, the computer models start randomly in either direction, and maintain either clockwise or counterclockwise circling. Symmetry can be broken by at least two mechanisms: (1) control of dynein activity on one outer doublet by sliding velocity can be influenced by the sliding velocity experienced on an adjacent outer doublet, or (2) a constant twist of the axoneme caused by an off-axis component of dynein force. This second mechanism appears more reasonable, but its effectiveness is highly dependent upon specifications for the elastic resistances of the model. These symmetry-breaking mechanisms need to be present only at the beginning of circling. With these models, once a circling direction is established, it remains stable even if the symmetry-breaking mechanism is removed. Copyright 2004 Wiley-Liss, Inc.

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Year:  2005        PMID: 15573415     DOI: 10.1002/cm.20046

Source DB:  PubMed          Journal:  Cell Motil Cytoskeleton        ISSN: 0886-1544


  25 in total

1.  Nodal cilia dynamics and the specification of the left/right axis in early vertebrate embryo development.

Authors:  Javier Buceta; Marta Ibañes; Diego Rasskin-Gutman; Yasushi Okada; Nobutaka Hirokawa; Juan Carlos Izpisúa-Belmonte
Journal:  Biophys J       Date:  2005-07-22       Impact factor: 4.033

2.  How molecular motors shape the flagellar beat.

Authors:  Ingmar H Riedel-Kruse; Andreas Hilfinger; Jonathon Howard; Frank Jülicher
Journal:  HFSP J       Date:  2007-09

Review 3.  Left-right determination: involvement of molecular motor KIF3, cilia, and nodal flow.

Authors:  Nobutaka Hirokawa; Yosuke Tanaka; Yasushi Okada
Journal:  Cold Spring Harb Perspect Biol       Date:  2009-07       Impact factor: 10.005

4.  Force generation and dynamics of individual cilia under external loading.

Authors:  David B Hill; Vinay Swaminathan; Ashley Estes; Jeremy Cribb; E Timothy O'Brien; C William Davis; R Superfine
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

5.  Simulation of cyclic dynein-driven sliding, splitting, and reassociation in an outer doublet pair.

Authors:  Charles J Brokaw
Journal:  Biophys J       Date:  2009-12-02       Impact factor: 4.033

6.  Organized chaos in Kupffer's vesicle: how a heterogeneous structure achieves consistent left-right patterning.

Authors:  D J Smith; T D Montenegro-Johnson; S S Lopes
Journal:  Bioarchitecture       Date:  2014

7.  A computational model of dynein activation patterns that can explain nodal cilia rotation.

Authors:  Duanduan Chen; Yi Zhong
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

8.  Mechanical properties of a primary cilium as measured by resonant oscillation.

Authors:  Andrew Resnick
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

9.  Modelling the fluid mechanics of cilia and flagella in reproduction and development.

Authors:  Thomas D Montenegro-Johnson; Andrew A Smith; David J Smith; Daniel Loghin; John R Blake
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-29       Impact factor: 1.890

Review 10.  Mechanical control of tissue morphogenesis.

Authors:  Parth Patwari; Richard T Lee
Journal:  Circ Res       Date:  2008-08-01       Impact factor: 17.367

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