Literature DB >> 15571364

Multivariate curve resolution applied to the analysis and resolution of two-dimensional [1H,15N] NMR reaction spectra.

Joaquim Jaumot1, Vicente Marchán, Raimundo Gargallo, Anna Grandas, Romà Tauler.   

Abstract

Multivariate curve resolution is proposed for the study of complex chemical reactions monitored by two-dimensional (2D) NMR spectroscopy. In particular, in this work, multivariate curve resolution is applied to the study of the reaction between (15)N-labeled cisplatin and the amino acid-nucleotide hybrid (Phac-Met-linker-p(5')dG). At several stages of the reaction, 2D [(1)H,(15)N] HSQC NMR spectra were acquired and stored in data matrices. In a first step, multivariate curve resolution was applied to analyze individually each one of these 2D spectra, allowing the resolution of the corresponding (1)H and (15)N one-dimensional correlation spectra. In a second step, the whole set of 2D spectra recorded along the reaction were simultaneously analyzed by multivariate curve resolution, allowing the resolution of the kinetic concentration profiles and of the pure 2D NMR spectra of each of the species detected along the reaction. Results finally obtained confirmed previously postulated reaction mechanisms involving the existence of two monofunctional adducts and of two bifunctional adducts, with the structure of one of them not completely resolved.

Entities:  

Year:  2004        PMID: 15571364     DOI: 10.1021/ac049509t

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  7 in total

1.  Quantitative analysis of multisite protein-ligand interactions by NMR: binding of intrinsically disordered p53 transactivation subdomains with the TAZ2 domain of CBP.

Authors:  Munehito Arai; Josephine C Ferreon; Peter E Wright
Journal:  J Am Chem Soc       Date:  2012-02-15       Impact factor: 15.419

2.  Principal component analysis of the pH-dependent conformational transitions of bovine beta-lactoglobulin monitored by heteronuclear NMR.

Authors:  Kazumasa Sakurai; Yuji Goto
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

3.  Visualizing the principal component of ¹H, ¹⁵N-HSQC NMR spectral changes that reflect protein structural or functional properties: application to troponin C.

Authors:  Ian M Robertson; Robert F Boyko; Brian D Sykes
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

4.  Study of conformational transitions of i-motif DNA using time-resolved fluorescence and multivariate analysis methods.

Authors:  Sanae Benabou; Cyril Ruckebusch; Michel Sliwa; Anna Aviñó; Ramon Eritja; Raimundo Gargallo; Anna de Juan
Journal:  Nucleic Acids Res       Date:  2019-07-26       Impact factor: 16.971

5.  Multiple Ligand-Bound States of a Phosphohexomutase Revealed by Principal Component Analysis of NMR Peak Shifts.

Authors:  Jia Xu; Akella V S Sarma; Yirui Wei; Lesa J Beamer; Steven R Van Doren
Journal:  Sci Rep       Date:  2017-07-13       Impact factor: 4.379

6.  Direct Mechanistic Evidence for a Nonheme Complex Reaction through a Multivariate XAS Analysis.

Authors:  Francesco Tavani; Andrea Martini; Giorgio Capocasa; Stefano Di Stefano; Osvaldo Lanzalunga; Paola D'Angelo
Journal:  Inorg Chem       Date:  2020-06-29       Impact factor: 5.165

7.  Binding Isotherms and Time Courses Readily from Magnetic Resonance.

Authors:  Jia Xu; Steven R Van Doren
Journal:  Anal Chem       Date:  2016-08-05       Impact factor: 6.986

  7 in total

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