Literature DB >> 15566281

Identification of a small molecule nonpeptide active site beta-secretase inhibitor that displays a nontraditional binding mode for aspartyl proteases.

Craig A Coburn1, Shawn J Stachel, Yue-Ming Li, Diane M Rush, Thomas G Steele, Elizabeth Chen-Dodson, M Katharine Holloway, Min Xu, Qian Huang, Ming-Tain Lai, Jillian DiMuzio, Ming-Chih Crouthamel, Xiao-Ping Shi, Vinod Sardana, Zhongguo Chen, Sanjeev Munshi, Lawrence Kuo, Gergely M Makara, D Allen Annis, Praveen K Tadikonda, Huw M Nash, Joseph P Vacca, Tong Wang.   

Abstract

A small molecule nonpeptide inhibitor of beta-secretase has been developed, and its binding has been defined through crystallographic determination of the enzyme-inhibitor complex. The molecule is shown to bind to the catalytic aspartate residues in an unprecedented manner in the field of aspartyl protease inhibition. Additionally, the complex reveals a heretofore unknown S(3) subpocket that is created by the inhibitor. This structure has served an important role in the design of newer beta-secretase inhibitors.

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Year:  2004        PMID: 15566281     DOI: 10.1021/jm049388p

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  18 in total

Review 1.  The influence of lead discovery strategies on the properties of drug candidates.

Authors:  György M Keserü; Gergely M Makara
Journal:  Nat Rev Drug Discov       Date:  2009-03       Impact factor: 84.694

2.  Effect of pH and ligand charge state on BACE-1 fragment docking performance.

Authors:  José L Domínguez; M Carmen Villaverde; Fredy Sussman
Journal:  J Comput Aided Mol Des       Date:  2013-05-03       Impact factor: 3.686

3.  Assigning the protonation states of the key aspartates in β-Secretase using QM/MM X-ray structure refinement.

Authors:  Ning Yu; Seth A Hayik; Bing Wang; Ning Liao; Charles H Reynolds; Kenneth M Merz
Journal:  J Chem Theory Comput       Date:  2006       Impact factor: 6.006

4.  Path-integral method for predicting relative binding affinities of protein-ligand complexes.

Authors:  Chandrika Mulakala; Yiannis N Kaznessis
Journal:  J Am Chem Soc       Date:  2009-04-01       Impact factor: 15.419

5.  Protein flexibility in virtual screening: the BACE-1 case study.

Authors:  Sandro Cosconati; Luciana Marinelli; Francesco Saverio Di Leva; Valeria La Pietra; Angela De Simone; Francesca Mancini; Vincenza Andrisano; Ettore Novellino; David S Goodsell; Arthur J Olson
Journal:  J Chem Inf Model       Date:  2012-10-08       Impact factor: 4.956

6.  Retrospective molecular docking study of WY-25105 ligand to β-secretase and bias of the three-dimensional structure flexibility.

Authors:  Leo Ghemtio; Nicolas Muzet
Journal:  J Mol Model       Date:  2013-04-07       Impact factor: 1.810

Review 7.  The "Sticky Patch" Model of Crystallization and Modification of Proteins for Enhanced Crystallizability.

Authors:  Zygmunt S Derewenda; Adam Godzik
Journal:  Methods Mol Biol       Date:  2017

Review 8.  BACE1 as a therapeutic target in Alzheimer's disease: rationale and current status.

Authors:  Genevieve Evin; Christopher Hince
Journal:  Drugs Aging       Date:  2013-10       Impact factor: 3.923

Review 9.  BACE1 (β-secretase) inhibitors for the treatment of Alzheimer's disease.

Authors:  Arun K Ghosh; Heather L Osswald
Journal:  Chem Soc Rev       Date:  2014-10-07       Impact factor: 54.564

10.  Discovery of potent beta-secretase (bace-1) inhibitors by the synthesis of isophthalamide-containing hybrids.

Authors:  Yi-Ping Zhu; Kun Xiao; Hai-Ping Yu; Lan-Ping Ma; Bing Xiong; Hai-Yan Zhang; Xin Wang; Jing-Ya Li; Jia Li; Jing-Kang Shen
Journal:  Acta Pharmacol Sin       Date:  2009-01-26       Impact factor: 6.150

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