Literature DB >> 15562987

A Java applet for multiple linked visualization of protein structure and sequence.

Thomas J Oldfield1.   

Abstract

The amount of biological data available from experimental techniques is huge, and rapidly expanding. The ability to make sense of this vast amount of data requires that we make correlations between distinct biological disciplines using visualization techniques to highlight the critical information. This article describes the visualization techniques of dynamic data brushing, view context maintenance, fisheye sequence view, and a magic lens that have been developed to display protein structure and sequence information.

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Year:  2004        PMID: 15562987     DOI: 10.1023/b:jcam.0000046849.15132.72

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  4 in total

Review 1.  Protein structure databases.

Authors:  Roman A Laskowski
Journal:  Mol Biotechnol       Date:  2011-06       Impact factor: 2.695

2.  The role of structural bioinformatics resources in the era of integrative structural biology.

Authors:  Aleksandras Gutmanas; Thomas J Oldfield; Ardan Patwardhan; Sanchayita Sen; Sameer Velankar; Gerard J Kleywegt
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-04-19

3.  MSDmotif: exploring protein sites and motifs.

Authors:  Adel Golovin; Kim Henrick
Journal:  BMC Bioinformatics       Date:  2008-07-17       Impact factor: 3.169

4.  PDBe: Protein Data Bank in Europe.

Authors:  Aleksandras Gutmanas; Younes Alhroub; Gary M Battle; John M Berrisford; Estelle Bochet; Matthew J Conroy; Jose M Dana; Manuel A Fernandez Montecelo; Glen van Ginkel; Swanand P Gore; Pauline Haslam; Rowan Hatherley; Pieter M S Hendrickx; Miriam Hirshberg; Ingvar Lagerstedt; Saqib Mir; Abhik Mukhopadhyay; Thomas J Oldfield; Ardan Patwardhan; Luana Rinaldi; Gaurav Sahni; Eduardo Sanz-García; Sanchayita Sen; Robert A Slowley; Sameer Velankar; Michael E Wainwright; Gerard J Kleywegt
Journal:  Nucleic Acids Res       Date:  2013-11-27       Impact factor: 16.971

  4 in total

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