Literature DB >> 15550669

Very low gene duplication rate in the yeast genome.

Li-Zhi Gao1, Hideki Innan.   

Abstract

The gene duplication rate in the yeast genome is estimated without assuming the molecular clock model to be approximately 0.01 to 0.06 per gene per billion years; this rate is two orders of magnitude lower than a previous estimate based on the molecular clock model. This difference is explained by extensive concerted evolution via gene conversion between duplicated genes, which violates the assumption of the molecular clock in the analyses of duplicated genes. The average length of the period of concerted evolution and the gene conversion rate are estimated to be approximately 25 million years and approximately 28 times the mutation rate, respectively.

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Year:  2004        PMID: 15550669     DOI: 10.1126/science.1102033

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  63 in total

1.  Evaluating Phylostratigraphic Evidence for Widespread De Novo Gene Birth in Genome Evolution.

Authors:  Bryan A Moyers; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2016-01-11       Impact factor: 16.240

2.  Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes.

Authors:  Yeong-Shin Lin; Jake K Byrnes; Jenn-Kang Hwang; Wen-Hsiung Li
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-13       Impact factor: 11.205

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Authors:  Brian C Thomas; Brent Pedersen; Michael Freeling
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4.  Extensive concerted evolution of rice paralogs and the road to regaining independence.

Authors:  Xiyin Wang; Haibao Tang; John E Bowers; Frank A Feltus; Andrew H Paterson
Journal:  Genetics       Date:  2007-11       Impact factor: 4.562

5.  Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication.

Authors:  Brad A Chapman; John E Bowers; Frank A Feltus; Andrew H Paterson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-08       Impact factor: 11.205

6.  Evolutionary strata on the X chromosomes of the dioecious plant Silene latifolia: evidence from new sex-linked genes.

Authors:  Roberta Bergero; Alan Forrest; Esther Kamau; Deborah Charlesworth
Journal:  Genetics       Date:  2007-02-07       Impact factor: 4.562

7.  Neofunctionalization of duplicated genes under the pressure of gene conversion.

Authors:  Kosuke M Teshima; Hideki Innan
Journal:  Genetics       Date:  2008-02-01       Impact factor: 4.562

8.  The neutral coalescent process for recent gene duplications and copy-number variants.

Authors:  Kevin R Thornton
Journal:  Genetics       Date:  2007-08-24       Impact factor: 4.562

9.  Degree dependence in rates of transcription factor evolution explains the unusual structure of transcription networks.

Authors:  Alexander J Stewart; Robert M Seymour; Andrew Pomiankowski
Journal:  Proc Biol Sci       Date:  2009-04-08       Impact factor: 5.349

10.  Linkage disequilibrium between incompatibility locus region genes in the plant Arabidopsis lyrata.

Authors:  Jenny Hagenblad; Jesper Bechsgaard; Deborah Charlesworth
Journal:  Genetics       Date:  2006-04-02       Impact factor: 4.562

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