Literature DB >> 15546714

Identification of a novel non-carbohydrate molecule that binds to the ribosomal A-site RNA.

Shawn P Maddaford1, Mina Motamed, Kevin B Turner, Min Soo K Choi, Jailall Ramnauth, Suman Rakhit, Robert R Hudgins, Daniele Fabris, Philip E Johnson.   

Abstract

We report the identification of a novel compound that binds to the Escherichia coli 16S ribosomal A-site. Binding by the compound was observed using nuclear magnetic resonance and mass spectrometry techniques. We show that the compound binds in the same position in the A-site RNA as occupied by the aminoglycoside class of antibiotics.

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Year:  2004        PMID: 15546714     DOI: 10.1016/j.bmcl.2004.09.088

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  5 in total

1.  Mapping noncovalent ligand binding to stemloop domains of the HIV-1 packaging signal by tandem mass spectrometry.

Authors:  Kevin B Turner; Nathan A Hagan; Andrew S Kohlway; Daniele Fabris
Journal:  J Am Soc Mass Spectrom       Date:  2006-07-26       Impact factor: 3.109

2.  1,3-Diazepanes of natural product-like complexity from cyanamide-induced rearrangement of epoxy-delta-lactams.

Authors:  Sanjay Dutta; Cody J Higginson; Bao T Ho; Kevin D Rynearson; Sergey M Dibrov; Thomas Hermann
Journal:  Org Lett       Date:  2010-01-15       Impact factor: 6.005

3.  Structure of the cytosine-cytosine mismatch in the thymidylate synthase mRNA binding site and analysis of its interaction with the aminoglycoside paromomycin.

Authors:  Tony J Tavares; Alexander V Beribisky; Philip E Johnson
Journal:  RNA       Date:  2009-03-27       Impact factor: 4.942

4.  Inhibitory effects of archetypical nucleic acid ligands on the interactions of HIV-1 nucleocapsid protein with elements of Psi-RNA.

Authors:  Kevin B Turner; Nathan A Hagan; Daniele Fabris
Journal:  Nucleic Acids Res       Date:  2006-03-06       Impact factor: 16.971

5.  Structural probing of the HIV-1 polypurine tract RNA:DNA hybrid using classic nucleic acid ligands.

Authors:  Kevin B Turner; Robert G Brinson; Hye Young Yi-Brunozzi; Jason W Rausch; Jennifer T Miller; Stuart F J Le Grice; John P Marino; Daniele Fabris
Journal:  Nucleic Acids Res       Date:  2008-04-09       Impact factor: 16.971

  5 in total

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