Literature DB >> 15539450

NetAcet: prediction of N-terminal acetylation sites.

Lars Kiemer1, Jannick Dyrløv Bendtsen, Nikolaj Blom.   

Abstract

We present here a neural network based method for prediction of N-terminal acetylation-by far the most abundant post-translational modification in eukaryotes. The method was developed on a yeast dataset for N-acetyltransferase A (NatA) acetylation, which is the type of N-acetylation for which most examples are known and for which orthologs have been found in several eukaryotes. We obtain correlation coefficients close to 0.7 on yeast data and a sensitivity up to 74% on mammalian data, suggesting that the method is valid for eukaryotic NatA orthologs.

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Year:  2004        PMID: 15539450     DOI: 10.1093/bioinformatics/bti130

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  41 in total

1.  Multiple post-translational modifications affect heterologous protein synthesis.

Authors:  Alexander A Tokmakov; Atsushi Kurotani; Tetsuo Takagi; Mitsutoshi Toyama; Mikako Shirouzu; Yasuo Fukami; Shigeyuki Yokoyama
Journal:  J Biol Chem       Date:  2012-06-06       Impact factor: 5.157

2.  Prediction of Nepsilon-acetylation on internal lysines implemented in Bayesian Discriminant Method.

Authors:  Ao Li; Yu Xue; Changjiang Jin; Minghui Wang; Xuebiao Yao
Journal:  Biochem Biophys Res Commun       Date:  2006-10-02       Impact factor: 3.575

3.  SysPTM: a systematic resource for proteomic research on post-translational modifications.

Authors:  Hong Li; Xiaobin Xing; Guohui Ding; Qingrun Li; Chuan Wang; Lu Xie; Rong Zeng; Yixue Li
Journal:  Mol Cell Proteomics       Date:  2009-04-14       Impact factor: 5.911

Review 4.  Genome and proteome annotation: organization, interpretation and integration.

Authors:  Gabrielle A Reeves; David Talavera; Janet M Thornton
Journal:  J R Soc Interface       Date:  2009-02-06       Impact factor: 4.118

5.  EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou's PseAAC.

Authors:  Tzu-Hao Chang; Li-Ching Wu; Tzong-Yi Lee; Shu-Pin Chen; Hsien-Da Huang; Jorng-Tzong Horng
Journal:  J Comput Aided Mol Des       Date:  2013-01-03       Impact factor: 3.686

6.  Human germline and pan-cancer variomes and their distinct functional profiles.

Authors:  Yang Pan; Konstantinos Karagiannis; Haichen Zhang; Hayley Dingerdissen; Amirhossein Shamsaddini; Quan Wan; Vahan Simonyan; Raja Mazumder
Journal:  Nucleic Acids Res       Date:  2014-09-17       Impact factor: 16.971

7.  iPSCs from a Hibernator Provide a Platform for Studying Cold Adaptation and Its Potential Medical Applications.

Authors:  Jingxing Ou; John M Ball; Yizhao Luan; Tantai Zhao; Kiyoharu J Miyagishima; Yufeng Xu; Huizhi Zhou; Jinguo Chen; Dana K Merriman; Zhi Xie; Barbara S Mallon; Wei Li
Journal:  Cell       Date:  2018-03-22       Impact factor: 41.582

8.  Proteomic analysis of Chinese hamster ovary cells.

Authors:  Deniz Baycin-Hizal; David L Tabb; Raghothama Chaerkady; Lily Chen; Nathan E Lewis; Harish Nagarajan; Vishaldeep Sarkaria; Amit Kumar; Daniel Wolozny; Joe Colao; Elena Jacobson; Yuan Tian; Robert N O'Meally; Sharon S Krag; Robert N Cole; Bernhard O Palsson; Hui Zhang; Michael Betenbaugh
Journal:  J Proteome Res       Date:  2012-10-05       Impact factor: 4.466

9.  Muscle differentiation in a colonial ascidian: organisation, gene expression and evolutionary considerations.

Authors:  Valentina Degasperi; Fabio Gasparini; Sebastian M Shimeld; Chiara Sinigaglia; Paolo Burighel; Lucia Manni
Journal:  BMC Dev Biol       Date:  2009-09-08       Impact factor: 1.978

10.  CAPIH: a Web interface for comparative analyses and visualization of host-HIV protein-protein interactions.

Authors:  Fan-Kai Lin; Chia-Lin Pan; Jinn-Moon Yang; Trees-Juen Chuang; Feng-Chi Chen
Journal:  BMC Microbiol       Date:  2009-08-12       Impact factor: 3.605

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