Literature DB >> 15528640

Genome update: DNA repeats in bacterial genomes.

David W Ussery1, Tim T Binnewies, Rodrigo Gouveia-Oliveira, Hanne Jarmer, Peter F Hallin.   

Abstract

Mesh：

Year:  2004        PMID： 15528640     DOI： 10.1099/mic.0.27628-0

Source DB:  PubMed          Journal:  Microbiology        ISSN： 1350-0872            Impact factor:   2.777


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  12 in total

Review 1.  Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.

Authors:  Tim T Binnewies; Yair Motro; Peter F Hallin; Ole Lund; David Dunn; Tom La; David J Hampson; Matthew Bellgard; Trudy M Wassenaar; David W Ussery
Journal:  Funct Integr Genomics       Date:  2006-05-12       Impact factor: 3.410

2.  The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes.

Authors:  James S Godde; Amanda Bickerton
Journal:  J Mol Evol       Date:  2006-04-11       Impact factor: 2.395

3.  Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.

Authors:  Claudine Médigue; Evelyne Krin; Géraldine Pascal; Valérie Barbe; Andreas Bernsel; Philippe N Bertin; Frankie Cheung; Stéphane Cruveiller; Salvino D'Amico; Angela Duilio; Gang Fang; Georges Feller; Christine Ho; Sophie Mangenot; Gennaro Marino; Johan Nilsson; Ermenegilda Parrilli; Eduardo P C Rocha; Zoé Rouy; Agnieszka Sekowska; Maria Luisa Tutino; David Vallenet; Gunnar von Heijne; Antoine Danchin
Journal:  Genome Res       Date:  2005-09-16       Impact factor: 9.043

4.  Transformation of environmental Bacillus subtilis isolates by transiently inducing genetic competence.

Authors:  Reindert Nijland; J Grant Burgess; Jeff Errington; Jan-Willem Veening
Journal:  PLoS One       Date:  2010-03-16       Impact factor: 3.240

5.  Variation in the genomic locations and sequence conservation of STAR elements among staphylococcal species provides insight into DNA repeat evolution.

Authors:  Joanne Purves; Matthew Blades; Yasrab Arafat; Salman A Malik; Christopher D Bayliss; Julie A Morrissey
Journal:  BMC Genomics       Date:  2012-09-28       Impact factor: 3.969

6.  Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8.

Authors:  Max Farnbacher; Thomas Jahns; Dirk Willrodt; Rolf Daniel; Rainer Haas; Alexander Goesmann; Stefan Kurtz; Gabriele Rieder
Journal:  BMC Genomics       Date:  2010-05-27       Impact factor: 3.969

7.  Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organisms.

Authors:  Triinu Koressaar; Kai Jõers; Maido Remm
Journal:  Bioinformatics       Date:  2009-04-08       Impact factor: 6.937

8.  Systematic identification of stem-loop containing sequence families in bacterial genomes.

Authors:  Luca Cozzuto; Mauro Petrillo; Giustina Silvestro; Pier Paolo Di Nocera; Giovanni Paolella
Journal:  BMC Genomics       Date:  2008-01-17       Impact factor: 3.969

9.  Metagenomics of the deep Mediterranean, a warm bathypelagic habitat.

Authors:  Ana-Belen Martín-Cuadrado; Purificación López-García; Juan-Carlos Alba; David Moreira; Luis Monticelli; Axel Strittmatter; Gerhard Gottschalk; Francisco Rodríguez-Valera
Journal:  PLoS One       Date:  2007-09-19       Impact factor: 3.240

10.  CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats.

Authors:  Charles Bland; Teresa L Ramsey; Fareedah Sabree; Micheal Lowe; Kyndall Brown; Nikos C Kyrpides; Philip Hugenholtz
Journal:  BMC Bioinformatics       Date:  2007-06-18       Impact factor: 3.169
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