Literature DB >> 15528533

Life history implications of rRNA gene copy number in Escherichia coli.

Bradley S Stevenson1, Thomas M Schmidt.   

Abstract

The role of the rRNA gene copy number as a central component of bacterial life histories was studied by using strains of Escherichia coli in which one or two of the seven rRNA operons (rrnA and/or rrnB) were deleted. The relative fitness of these strains was determined in competition experiments in both batch and chemostat cultures. In batch cultures, the decrease in relative fitness corresponded to the number of rRNA operons deleted, which could be accounted for completely by increased lag times and decreased growth rates. The magnitude of the deleterious effect varied with the environment in which fitness was measured: the negative consequences of rRNA operon deletions increased under culture conditions permitting more-rapid growth. The rRNA operon deletion strains were not more effective competitors under the regimen of constant, limited resources provided in chemostat cultures. Enhanced fitness in chemostat cultures would have suggested a simple tradeoff in which deletion strains grew faster (due to more efficient resource utilization) under resource limitation. The contributions of growth rate, lag time, Ks, and death rate to the fitness of each strain were verified through mathematical simulation of competition experiments. These data support the hypothesis that multiple rRNA operons are a component of bacterial life history and that they confer a selective advantage permitting microbes to respond quickly and grow rapidly in environments characterized by fluctuations in resource availability.

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Year:  2004        PMID: 15528533      PMCID: PMC525164          DOI: 10.1128/AEM.70.11.6670-6677.2004

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  30 in total

1.  Construction and initial characterization of Escherichia coli strains with few or no intact chromosomal rRNA operons.

Authors:  T Asai; C Condon; J Voulgaris; D Zaporojets; B Shen; M Al-Omar; C Squires; C L Squires
Journal:  J Bacteriol       Date:  1999-06       Impact factor: 3.490

2.  rrndb: the Ribosomal RNA Operon Copy Number Database.

Authors:  J A Klappenbach; P R Saxman; J R Cole; T M Schmidt
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS.

Authors:  S Shigenobu; H Watanabe; M Hattori; Y Sakaki; H Ishikawa
Journal:  Nature       Date:  2000-09-07       Impact factor: 49.962

4.  Resurgent Vibrio cholerae O139: rearrangement of cholera toxin genetic elements and amplification of rrn operon.

Authors:  G Khetawat; R K Bhadra; S Nandi; J Das
Journal:  Infect Immun       Date:  1999-01       Impact factor: 3.441

5.  5S rRNA gene deletions cause an unexpectedly high fitness loss in Escherichia coli.

Authors:  D Ammons; J Rampersad; G E Fox
Journal:  Nucleic Acids Res       Date:  1999-01-15       Impact factor: 16.971

6.  rRNA operon copy number reflects ecological strategies of bacteria.

Authors:  J A Klappenbach; J M Dunbar; T M Schmidt
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

7.  Identification of spacer tRNA genes in individual ribosomal RNA transcription units of Escherichia coli.

Authors:  E A Morgan; T Ikemura; M Nomura
Journal:  Proc Natl Acad Sci U S A       Date:  1977-07       Impact factor: 11.205

8.  An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria.

Authors:  T Asai; D Zaporojets; C Squires; C L Squires
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-02       Impact factor: 11.205

9.  Rates and consequences of recombination between rRNA operons.

Authors:  Joel G Hashimoto; Bradley S Stevenson; Thomas M Schmidt
Journal:  J Bacteriol       Date:  2003-02       Impact factor: 3.490

10.  50 million years of genomic stasis in endosymbiotic bacteria.

Authors:  Ivica Tamas; Lisa Klasson; Björn Canbäck; A Kristina Näslund; Ann-Sofie Eriksson; Jennifer J Wernegreen; Jonas P Sandström; Nancy A Moran; Siv G E Andersson
Journal:  Science       Date:  2002-06-28       Impact factor: 47.728

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  61 in total

1.  Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes.

Authors:  Kristen M DeAngelis; Mary K Firestone
Journal:  Appl Environ Microbiol       Date:  2012-01-27       Impact factor: 4.792

2.  The variable subdomain of Escherichia coli SecA functions to regulate SecA ATPase activity and ADP release.

Authors:  Sanchaita Das; Lorry M Grady; Jennifer Michtavy; Yayan Zhou; Frederick M Cohan; Manju M Hingorani; Donald B Oliver
Journal:  J Bacteriol       Date:  2012-03-02       Impact factor: 3.490

3.  Stratified communities of active Archaea in deep marine subsurface sediments.

Authors:  Ketil B Sørensen; Andreas Teske
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

4.  Effect of nutrient periodicity on microbial community dynamics.

Authors:  Militza Carrero-Colón; Cindy H Nakatsu; Allan Konopka
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

5.  Performance of the translational apparatus varies with the ecological strategies of bacteria.

Authors:  Les Dethlefsen; Thomas M Schmidt
Journal:  J Bacteriol       Date:  2007-02-02       Impact factor: 3.490

6.  Identification of Aeromonas veronii genes required for colonization of the medicinal leech, Hirudo verbana.

Authors:  Adam C Silver; Natasha M Rabinowitz; Stefan Küffer; Joerg Graf
Journal:  J Bacteriol       Date:  2007-07-06       Impact factor: 3.490

7.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.

Authors:  Naomi L Ward; Jean F Challacombe; Peter H Janssen; Bernard Henrissat; Pedro M Coutinho; Martin Wu; Gary Xie; Daniel H Haft; Michelle Sait; Jonathan Badger; Ravi D Barabote; Brent Bradley; Thomas S Brettin; Lauren M Brinkac; David Bruce; Todd Creasy; Sean C Daugherty; Tanja M Davidsen; Robert T DeBoy; J Chris Detter; Robert J Dodson; A Scott Durkin; Anuradha Ganapathy; Michelle Gwinn-Giglio; Cliff S Han; Hoda Khouri; Hajnalka Kiss; Sagar P Kothari; Ramana Madupu; Karen E Nelson; William C Nelson; Ian Paulsen; Kevin Penn; Qinghu Ren; M J Rosovitz; Jeremy D Selengut; Susmita Shrivastava; Steven A Sullivan; Roxanne Tapia; L Sue Thompson; Kisha L Watkins; Qi Yang; Chunhui Yu; Nikhat Zafar; Liwei Zhou; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2009-02-05       Impact factor: 4.792

8.  Active transcription of rRNA operons condenses the nucleoid in Escherichia coli: examining the effect of transcription on nucleoid structure in the absence of transertion.

Authors:  Julio E Cabrera; Cedric Cagliero; Selwyn Quan; Catherine L Squires; Ding Jun Jin
Journal:  J Bacteriol       Date:  2009-04-24       Impact factor: 3.490

9.  Small-scale copy number variation and large-scale changes in gene expression.

Authors:  Yuriy Mileyko; Richard I Joh; Joshua S Weitz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-22       Impact factor: 11.205

10.  How many initiator tRNA genes does Escherichia coli need?

Authors:  Laasya Samhita; Vidyanand Nanjundiah; Umesh Varshney
Journal:  J Bacteriol       Date:  2014-05-09       Impact factor: 3.490

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