Literature DB >> 15524552

Spectrum and symbol distribution of nucleotide sequences.

Vera Afreixo1, Paulo J S G Ferreira, Dorabella Santos.   

Abstract

This paper explores the connection between the size of the spectral coefficients of a nucleotide or any other symbolic sequence and the distribution of nucleotides along certain subsequences. It explains the connection between the nucleotide distribution and the size of the spectral coefficients, and gives a necessary and sufficient condition for a coefficient to have a prescribed magnitude. Furthermore, it gives a fast algorithm for computing the value of a given spectral coefficient of a nucleotide sequence, discussing periods 3 and 4 as examples. Finally, it shows that the spectrum of a symbolic sequence is redundant, in the sense that there exists a linear recursion that determines the values of all the coefficients from those of a subset.

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Year:  2004        PMID: 15524552     DOI: 10.1103/PhysRevE.70.031910

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  2 in total

1.  A new method to cluster DNA sequences using Fourier power spectrum.

Authors:  Tung Hoang; Changchuan Yin; Hui Zheng; Chenglong Yu; Rong Lucy He; Stephen S-T Yau
Journal:  J Theor Biol       Date:  2015-03-05       Impact factor: 2.691

2.  Genome analysis with inter-nucleotide distances.

Authors:  Vera Afreixo; Carlos A C Bastos; Armando J Pinho; Sara P Garcia; Paulo J S G Ferreira
Journal:  Bioinformatics       Date:  2009-09-16       Impact factor: 6.937

  2 in total

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