Literature DB >> 15522414

C-H. . .pi interactions in the metal-porphyrin complexes with chelate ring as the H acceptor.

Vesna B Medaković1, Milos K Milcić, Goran A Bogdanović, Snezana D Zarić.   

Abstract

Specific C-H. . .pi interactions with the pi-system of porphyrinato chelate ring were found in crystal structures of transition metal complexes from the Cambridge Structural Database and statistical analysis of geometrical parameters for intramolecular and intermolecular interactions was done. By density functional theory calculations on a model system it was evaluated that an interaction energy is above 1.5 kcal/mol and that the strongest interaction occurs when the distance between hydrogen atom and the center of the chelate ring is 2.6 A. This prediction is in good agreement with the distances for intermolecular interactions found in the crystal structures. In many cases the intramolecular interaction distances are much shorter than 2.6 A, and these short distances are caused by geometrical constrains. The C-H. . .pi interactions with chelate ring of porphyrinato ligand can influence the structure, contribute to its stability, and play some role in the function of biomolecules with metalo porphyrins.

Entities:  

Year:  2004        PMID: 15522414     DOI: 10.1016/j.jinorgbio.2004.08.012

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  6 in total

1.  A reexamination of correlations of amino acids with particular secondary structures.

Authors:  Sasa N Malkov; Miodrag V Zivković; Milos V Beljanski; Srdan D Stojanović; Snezana D Zarić
Journal:  Protein J       Date:  2009-02       Impact factor: 2.371

2.  Geometries of stacking interactions between phenanthroline ligands in crystal structures of square-planar metal complexes.

Authors:  Goran V Janjić; Predrag V Petrović; Dragan B Ninković; Snežana D Zarić
Journal:  J Mol Model       Date:  2010-12-16       Impact factor: 1.810

3.  Metalloporphyrin intercalation in liposome membranes: ESR study.

Authors:  Dariusz Man; Rudolf Słota; Małgorzata A Broda; Giuseppe Mele; Jun Li
Journal:  J Biol Inorg Chem       Date:  2010-10-21       Impact factor: 3.358

4.  XH/pi interactions with the pi system of porphyrin ring in porphyrin-containing proteins.

Authors:  Srdan D Stojanović; Vesna B Medaković; Goran Predović; Milos Beljanski; Snezana D Zarić
Journal:  J Biol Inorg Chem       Date:  2007-07-21       Impact factor: 3.862

5.  Oxygen and Conformation Dependent Protein Oxidation and Aggregation by Porphyrins in Hepatocytes and Light-Exposed Cells.

Authors:  Dhiman Maitra; Eric L Carter; Rani Richardson; Laure Rittié; Venkatesha Basrur; Haoming Zhang; Alexey I Nesvizhskii; Yoichi Osawa; Matthew W Wolf; Stephen W Ragsdale; Nicolai Lehnert; Harald Herrmann; M Bishr Omary
Journal:  Cell Mol Gastroenterol Hepatol       Date:  2019-06-04

Review 6.  Porphyrin-Induced Protein Oxidation and Aggregation as a Mechanism of Porphyria-Associated Cell Injury.

Authors:  Dhiman Maitra; Juliana Bragazzi Cunha; Jared S Elenbaas; Herbert L Bonkovsky; Jordan A Shavit; M Bishr Omary
Journal:  Cell Mol Gastroenterol Hepatol       Date:  2019-06-21
  6 in total

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