Literature DB >> 15520810

Strategies for RNA folding and assembly.

Renée Schroeder1, Andrea Barta, Katharina Semrad.   

Abstract

RNA is structurally very flexible, which provides the basis for its functional diversity. An RNA molecule can often adopt different conformations, which enables the regulation of its function through folding. Proteins help RNAs reach their functionally active conformation by increasing their structural stability or by chaperoning the folding process. Large, dynamic RNA-protein complexes, such as the ribosome or the spliceosome, require numerous proteins that coordinate conformational switches of the RNA components during assembly and during their respective activities.

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Year:  2004        PMID: 15520810     DOI: 10.1038/nrm1497

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  137 in total

1.  Nonhierarchical ribonucleoprotein assembly suggests a strain-propagation model for protein-facilitated RNA folding.

Authors:  Caia D S Duncan; Kevin M Weeks
Journal:  Biochemistry       Date:  2010-07-06       Impact factor: 3.162

Review 2.  Computational approaches to RNA structure prediction, analysis, and design.

Authors:  Christian Laing; Tamar Schlick
Journal:  Curr Opin Struct Biol       Date:  2011-04-21       Impact factor: 6.809

Review 3.  Roles of DEAD-box proteins in RNA and RNP Folding.

Authors:  Cynthia Pan; Rick Russell
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

Review 4.  Taming free energy landscapes with RNA chaperones.

Authors:  Sarah A Woodson
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

Review 5.  RNA folding in living cells.

Authors:  Georgeta Zemora; Christina Waldsich
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

6.  Strategies for articulated multibody-based adaptive coarse grain simulation of RNA.

Authors:  Mohammad Poursina; Kishor D Bhalerao; Samuel C Flores; Kurt S Anderson; Alain Laederach
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

7.  Structural insights into RNA quality control: the Ro autoantigen binds misfolded RNAs via its central cavity.

Authors:  Adam J Stein; Gabriele Fuchs; Chunmei Fu; Sandra L Wolin; Karin M Reinisch
Journal:  Cell       Date:  2005-05-20       Impact factor: 41.582

8.  Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule.

Authors:  Alain Laederach; Inna Shcherbakova; Mike P Liang; Michael Brenowitz; Russ B Altman
Journal:  J Mol Biol       Date:  2006-03-30       Impact factor: 5.469

9.  Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings.

Authors:  Maximillian H Bailor; Catherine Musselman; Alexandar L Hansen; Kush Gulati; Dinshaw J Patel; Hashim M Al-Hashimi
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

10.  Selective stabilization of natively folded RNA structure by DNA constraints.

Authors:  Joseph P Gerdt; Chandrasekhar V Miduturu; Scott K Silverman
Journal:  J Am Chem Soc       Date:  2008-10-15       Impact factor: 15.419

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