Literature DB >> 15519694

Internal organisation of the nucleus: assembly of compartments by macromolecular crowding and the nuclear matrix model.

Ronald Hancock1.   

Abstract

Many and possibly all macromolecules in the nucleus are segregated into discrete compartments, but the current model that this is achieved by a fibrillar nuclear matrix which structures the nuclear interior and compartments is not consistent with all experimental observations, as reviewed here. New results are presented which suggest that macromolecular crowding forces play a crucial role in the assembly of at least two compartments, nucleoli and PML bodies, and an in vitro system in which crowding assembles macromolecular complexes into structures which resemble nuclear compartments is described. Crowding forces, which are strong in the nucleus due to the high macromolecule concentration (in the range of 100 mg/ml), vastly increase the association constants of intermolecular interactions and can segregate different macromolecules into discrete phases. The model that they play a role in compartmentalisation of the nucleus is generally consistent with the properties of compartments, including their spherical or quasispherical form and their dynamic and mobile nature.

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Year:  2004        PMID: 15519694     DOI: 10.1016/j.biolcel.2004.05.003

Source DB:  PubMed          Journal:  Biol Cell        ISSN: 0248-4900            Impact factor:   4.458


  33 in total

1.  Functional nuclear topography of transcriptionally inducible extra-chromosomal transgene clusters.

Authors:  Manja Meggendorfer; Claudia Weierich; Horst Wolff; Ruth Brack-Werner; Thomas Cremer
Journal:  Chromosome Res       Date:  2010-06-08       Impact factor: 5.239

Review 2.  Chromatin higher-order structure and dynamics.

Authors:  Christopher L Woodcock; Rajarshi P Ghosh
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-04-07       Impact factor: 10.005

3.  Birefringence and DNA condensation of liquid crystalline chromosomes.

Authors:  Man H Chow; Kosmo T H Yan; Michael J Bennett; Joseph T Y Wong
Journal:  Eukaryot Cell       Date:  2010-04-16

4.  Functional structure of the cell nucleus.

Authors:  Pavel Hozák; Stan Fakan
Journal:  Histochem Cell Biol       Date:  2005-10-27       Impact factor: 4.304

Review 5.  Organization of interphase chromatin.

Authors:  Rachel A Horowitz-Scherer; Christopher L Woodcock
Journal:  Chromosoma       Date:  2005-12-17       Impact factor: 4.316

6.  Chromatin code, local non-equilibrium dynamics, and the emergence of transcription regulatory programs.

Authors:  A Benecke
Journal:  Eur Phys J E Soft Matter       Date:  2006-03-07       Impact factor: 1.890

7.  Transcriptional Repressor TrmBL2 from Thermococcus kodakarensis Forms Filamentous Nucleoprotein Structures and Competes with Histones for DNA Binding in a Salt- and DNA Supercoiling-dependent Manner.

Authors:  Artem K Efremov; Yuanyuan Qu; Hugo Maruyama; Ci J Lim; Kunio Takeyasu; Jie Yan
Journal:  J Biol Chem       Date:  2015-04-30       Impact factor: 5.157

8.  Do femtonewton forces affect genetic function? A review.

Authors:  Seth Blumberg; Matthew W Pennington; Jens-Christian Meiners
Journal:  J Biol Phys       Date:  2006-03-29       Impact factor: 1.365

9.  Fine structure of the "PcG body" in human U-2 OS cells established by correlative light-electron microscopy.

Authors:  Jana Smigová; Pavel Juda; Dušan Cmarko; Ivan Raška
Journal:  Nucleus       Date:  2011 May-Jun       Impact factor: 4.197

10.  Protein stability and folding kinetics in the nucleus and endoplasmic reticulum of eucaryotic cells.

Authors:  A Dhar; K Girdhar; D Singh; H Gelman; S Ebbinghaus; M Gruebele
Journal:  Biophys J       Date:  2011-07-20       Impact factor: 4.033

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