Literature DB >> 15516575

Continuous control in bacterial regulatory circuits.

Eric Batchelor1, Thomas J Silhavy, Mark Goulian.   

Abstract

We show that for two well-characterized regulatory circuits in Escherichia coli, Tn10 tetracycline resistance and porin osmoregulation, the transcriptional outputs in individual cells are graded functions of the applied stimuli. These systems are therefore examples of naturally occurring regulatory circuits that exhibit continuous control of transcription. Surprisingly, however, we find that porin osmoregulation is open loop; i.e., the porin expression level does not feed back into the regulatory circuit. This mode of control is particularly interesting for an organism such as E. coli, which proliferates in diverse environments, and raises important questions regarding the biologically relevant inputs and outputs for this system.

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Year:  2004        PMID: 15516575      PMCID: PMC524909          DOI: 10.1128/JB.186.22.7618-7625.2004

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  42 in total

1.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

2.  Robustness as a measure of plausibility in models of biochemical networks.

Authors:  Mineo Morohashi; Amanda E Winn; Mark T Borisuk; Hamid Bolouri; John Doyle; Hiroaki Kitano
Journal:  J Theor Biol       Date:  2002-05-07       Impact factor: 2.691

3.  Gene expression from plasmids containing the araBAD promoter at subsaturating inducer concentrations represents mixed populations.

Authors:  D A Siegele; J C Hu
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-22       Impact factor: 11.205

Review 4.  Molecular basis of bacterial outer membrane permeability.

Authors:  H Nikaido; M Vaara
Journal:  Microbiol Rev       Date:  1985-03

5.  Regulation of ompC and ompF expression in Escherichia coli in the absence of envZ.

Authors:  S Forst; J Delgado; G Ramakrishnan; M Inouye
Journal:  J Bacteriol       Date:  1988-11       Impact factor: 3.490

6.  Transcriptional enhancers act in cis to suppress position-effect variegation.

Authors:  M C Walters; W Magis; S Fiering; J Eidemiller; D Scalzo; M Groudine; D I Martin
Journal:  Genes Dev       Date:  1996-01-15       Impact factor: 11.361

7.  Regulation of outer membrane porin protein synthesis in Escherichia coli K-12: ompF regulates the expression of ompC.

Authors:  Y Ozawa; S Mizushima
Journal:  J Bacteriol       Date:  1983-05       Impact factor: 3.490

8.  Signal transduction and osmoregulation in Escherichia coli: a novel mutant of the positive regulator, OmpR, that functions in a phosphorylation-independent manner.

Authors:  K Kanamaru; T Mizuno
Journal:  J Biochem       Date:  1992-04       Impact factor: 3.387

9.  Bistability in the JNK cascade.

Authors:  C P Bagowski; J E Ferrell
Journal:  Curr Biol       Date:  2001-08-07       Impact factor: 10.834

10.  Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system.

Authors:  Eric Batchelor; Mark Goulian
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-09       Impact factor: 11.205

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  22 in total

1.  Sigma cascades in prokaryotic regulatory networks.

Authors:  Ferric C Fang
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-28       Impact factor: 11.205

2.  Flexible architecture of the Streptococcus pyogenes FCT genome region: finally the clue for understanding purulent skin diseases and long-term persistence?

Authors:  Andreas Podbielski
Journal:  J Bacteriol       Date:  2006-12-01       Impact factor: 3.490

3.  Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression.

Authors:  Dmitry Nevozhay; Rhys M Adams; Kevin F Murphy; Kresimir Josic; Gábor Balázsi
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-11       Impact factor: 11.205

4.  Input output robustness in simple bacterial signaling systems.

Authors:  Guy Shinar; Ron Milo; María Rodríguez Martínez; Uri Alon
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-06       Impact factor: 11.205

5.  Hysteretic and graded responses in bacterial two-component signal transduction.

Authors:  Oleg A Igoshin; Rui Alves; Michael A Savageau
Journal:  Mol Microbiol       Date:  2008-03-19       Impact factor: 3.501

Review 6.  Two-component signaling circuit structure and properties.

Authors:  Mark Goulian
Journal:  Curr Opin Microbiol       Date:  2010-02-10       Impact factor: 7.934

7.  The Escherichia coli CpxA-CpxR envelope stress response system regulates expression of the porins ompF and ompC.

Authors:  Eric Batchelor; Don Walthers; Linda J Kenney; Mark Goulian
Journal:  J Bacteriol       Date:  2005-08       Impact factor: 3.490

8.  Kinetic buffering of cross talk between bacterial two-component sensors.

Authors:  Eli S Groban; Elizabeth J Clarke; Howard M Salis; Susan M Miller; Christopher A Voigt
Journal:  J Mol Biol       Date:  2009-05-13       Impact factor: 5.469

9.  Role of FimW, FimY, and FimZ in regulating the expression of type i fimbriae in Salmonella enterica serovar Typhimurium.

Authors:  Supreet Saini; Jeffrey A Pearl; Christopher V Rao
Journal:  J Bacteriol       Date:  2009-02-13       Impact factor: 3.490

10.  Cross-talk suppression between the CpxA-CpxR and EnvZ-OmpR two-component systems in E. coli.

Authors:  Albert Siryaporn; Mark Goulian
Journal:  Mol Microbiol       Date:  2008-08-29       Impact factor: 3.501

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