Literature DB >> 15514080

A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium.

Bikram S Gill1, Rudi Appels, Anna-Maria Botha-Oberholster, C Robin Buell, Jeffrey L Bennetzen, Boulos Chalhoub, Forrest Chumley, Jan Dvorák, Masaru Iwanaga, Beat Keller, Wanlong Li, W Richard McCombie, Yasunari Ogihara, Francis Quetier, Takuji Sasaki.   

Abstract

Sponsored by the National Science Foundation and the U.S. Department of Agriculture, a wheat genome sequencing workshop was held November 10-11, 2003, in Washington, DC. It brought together 63 scientists of diverse research interests and institutions, including 45 from the United States and 18 from a dozen foreign countries (see list of participants at http://www.ksu.edu/igrow). The objectives of the workshop were to discuss the status of wheat genomics, obtain feedback from ongoing genome sequencing projects, and develop strategies for sequencing the wheat genome. The purpose of this report is to convey the information discussed at the workshop and provide the basis for an ongoing dialogue, bringing forth comments and suggestions from the genetics community.

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Year:  2004        PMID: 15514080      PMCID: PMC1448818          DOI: 10.1534/genetics.104.034769

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  80 in total

1.  Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution.

Authors:  T Wicker; N Stein; L Albar; C Feuillet; E Schlagenhauf; B Keller
Journal:  Plant J       Date:  2001-05       Impact factor: 6.417

2.  Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat.

Authors:  H Shaked; K Kashkush; H Ozkan; M Feldman; A A Levy
Journal:  Plant Cell       Date:  2001-08       Impact factor: 11.277

3.  Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat.

Authors:  Khalil Kashkush; Moshe Feldman; Avraham A Levy
Journal:  Nat Genet       Date:  2002-12-16       Impact factor: 38.330

4.  Construction and characterization of a bacterial artificial chromosome (BAC) library for the A genome of wheat.

Authors:  D Lijavetzky; G Muzzi; T Wicker; B Keller; R Wing; J Dubcovsky
Journal:  Genome       Date:  1999-12       Impact factor: 2.166

5.  Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing.

Authors:  Rutger Van der Hoeven; Catherine Ronning; James Giovannoni; Gregory Martin; Steven Tanksley
Journal:  Plant Cell       Date:  2002-07       Impact factor: 11.277

6.  High-Cot sequence analysis of the maize genome.

Authors:  Yinan Yuan; Phillip J SanMiguel; Jeffrey L Bennetzen
Journal:  Plant J       Date:  2003-04       Impact factor: 6.417

7.  Chromosomal variation and evolution.

Authors:  G L Stebbins
Journal:  Science       Date:  1966-06-10       Impact factor: 47.728

8.  A physical map of the human genome.

Authors:  J D McPherson; M Marra; L Hillier; R H Waterston; A Chinwalla; J Wallis; M Sekhon; K Wylie; E R Mardis; R K Wilson; R Fulton; T A Kucaba; C Wagner-McPherson; W B Barbazuk; S G Gregory; S J Humphray; L French; R S Evans; G Bethel; A Whittaker; J L Holden; O T McCann; A Dunham; C Soderlund; C E Scott; D R Bentley; G Schuler; H C Chen; W Jang; E D Green; J R Idol; V V Maduro; K T Montgomery; E Lee; A Miller; S Emerling; R Gibbs; S Scherer; J H Gorrell; E Sodergren; K Clerc-Blankenburg; P Tabor; S Naylor; D Garcia; P J de Jong; J J Catanese; N Nowak; K Osoegawa; S Qin; L Rowen; A Madan; M Dors; L Hood; B Trask; C Friedman; H Massa; V G Cheung; I R Kirsch; T Reid; R Yonescu; J Weissenbach; T Bruls; R Heilig; E Branscomb; A Olsen; N Doggett; J F Cheng; T Hawkins; R M Myers; J Shang; L Ramirez; J Schmutz; O Velasquez; K Dixon; N E Stone; D R Cox; D Haussler; W J Kent; T Furey; S Rogic; S Kennedy; S Jones; A Rosenthal; G Wen; M Schilhabel; G Gloeckner; G Nyakatura; R Siebert; B Schlegelberger; J Korenberg; X N Chen; A Fujiyama; M Hattori; A Toyoda; T Yada; H S Park; Y Sakaki; N Shimizu; S Asakawa; K Kawasaki; T Sasaki; A Shintani; A Shimizu; K Shibuya; J Kudoh; S Minoshima; J Ramser; P Seranski; C Hoff; A Poustka; R Reinhardt; H Lehrach
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

9.  Identification and high-density mapping of gene-rich regions in chromosome group 1 of wheat.

Authors:  K S Gill; B S Gill; T R Endo; T Taylor
Journal:  Genetics       Date:  1996-12       Impact factor: 4.562

10.  The wheat VRN2 gene is a flowering repressor down-regulated by vernalization.

Authors:  Liuling Yan; Artem Loukoianov; Ann Blechl; Gabriela Tranquilli; Wusirika Ramakrishna; Phillip SanMiguel; Jeffrey L Bennetzen; Viviana Echenique; Jorge Dubcovsky
Journal:  Science       Date:  2004-03-12       Impact factor: 47.728

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  107 in total

1.  High-resolution radiation hybrid map of wheat chromosome 1D.

Authors:  Venu Kalavacharla; Khwaja Hossain; Yong Gu; Oscar Riera-Lizarazu; M Isabel Vales; Suresh Bhamidimarri; Jose L Gonzalez-Hernandez; Shivcharan S Maan; Shahryar F Kianian
Journal:  Genetics       Date:  2006-04-19       Impact factor: 4.562

2.  Genomic associations for drought tolerance on the short arm of wheat chromosome 4B.

Authors:  Suhas Kadam; Kalpana Singh; Sanyukta Shukla; Sonia Goel; Prashant Vikram; Vasantrao Pawar; Kishor Gaikwad; Renu Khanna-Chopra; Nagendra Singh
Journal:  Funct Integr Genomics       Date:  2012-04-05       Impact factor: 3.410

3.  Characterization and precise mapping of a QTL increasing spike number with pleiotropic effects in wheat.

Authors:  Shimin Deng; Xinru Wu; Yuye Wu; Ronghua Zhou; Honggang Wang; Jizeng Jia; Shubing Liu
Journal:  Theor Appl Genet       Date:  2010-09-26       Impact factor: 5.699

4.  The utility of NBS-profiling for characterization of yellow rust resistance in an F6 durum wheat population.

Authors:  Hale A Tufan; Belgin Göçmen Taşkin; Ruth Maccormack; Lesley A Boyd; Zeki Kaya; M Türet
Journal:  J Genet       Date:  2019-11       Impact factor: 1.166

Review 5.  Exploration of small non coding RNAs in wheat (Triticum aestivum L.).

Authors:  Yingyin Yao; Qixin Sun
Journal:  Plant Mol Biol       Date:  2011-10-19       Impact factor: 4.076

6.  Dissection of the nuclear genome of barley by chromosome flow sorting.

Authors:  Pavla Suchánková; Marie Kubaláková; Pavlína Kovárová; Jan Bartos; Jarmila Cíhalíková; Márta Molnár-Láng; Takashi R Endo; Jaroslav Dolezel
Journal:  Theor Appl Genet       Date:  2006-06-30       Impact factor: 5.699

7.  Identification and characterization of high temperature stress responsive genes in bread wheat (Triticum aestivum L.) and their regulation at various stages of development.

Authors:  Harsh Chauhan; Neetika Khurana; Akhilesh K Tyagi; Jitendra P Khurana; Paramjit Khurana
Journal:  Plant Mol Biol       Date:  2010-10-23       Impact factor: 4.076

Review 8.  RNA interference for wheat functional gene analysis.

Authors:  Daolin Fu; Cristobal Uauy; Ann Blechl; Jorge Dubcovsky
Journal:  Transgenic Res       Date:  2007-10-19       Impact factor: 2.788

9.  Joint immobilization of plant growth-promoting bacteria and green microalgae in alginate beads as an experimental model for studying plant-bacterium interactions.

Authors:  Luz E de-Bashan; Yoav Bashan
Journal:  Appl Environ Microbiol       Date:  2008-09-12       Impact factor: 4.792

10.  Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns.

Authors:  Kanako Kawaura; Keiichi Mochida; Akiko Enju; Yasushi Totoki; Atsushi Toyoda; Yoshiyuki Sakaki; Chikatoshi Kai; Jun Kawai; Yoshihide Hayashizaki; Motoaki Seki; Kazuo Shinozaki; Yasunari Ogihara
Journal:  BMC Genomics       Date:  2009-06-18       Impact factor: 3.969

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