Literature DB >> 15513995

COBrA: a bio-ontology editor.

Stuart Aitken1, Roman Korf, Bonnie Webber, Jonathan Bard.   

Abstract

COBrA is a Java-based ontology editor for bio-ontologies that distinguishes itself from other editors by supporting the linking of concepts between two ontologies, and providing sophisticated analysis and verification functions. In addition to the Gene Ontology and Open Biology Ontologies formats, COBrA can import and export ontologies in the Semantic Web formats RDF, RDFS and OWL.

Mesh：

Year:  2004        PMID： 15513995     DOI： 10.1093/bioinformatics/bti097

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  9 in total

Review 1.  Bio-ontologies: current trends and future directions.

Authors:  Olivier Bodenreider; Robert Stevens
Journal:  Brief Bioinform       Date:  2006-08-09       Impact factor: 11.622

Review 2.  Systems developmental biology: the use of ontologies in annotating models and in identifying gene function within and across species.

Authors:  Jonathan Bard
Journal:  Mamm Genome       Date:  2007-06-14       Impact factor: 2.957

3.  The mouse-human anatomy ontology mapping project.

Authors:  Terry F Hayamizu; Sherri de Coronado; Gilberto Fragoso; Nicholas Sioutos; James A Kadin; Martin Ringwald
Journal:  Database (Oxford)       Date:  2012-03-20       Impact factor: 3.451

4.  The AEO, an Ontology of Anatomical Entities for Classifying Animal Tissues and Organs.

Authors:  Jonathan B L Bard
Journal:  Front Genet       Date:  2012-02-14       Impact factor: 4.599

5.  AlzPharm: integration of neurodegeneration data using RDF.

Authors:  Hugo Y K Lam; Luis Marenco; Tim Clark; Yong Gao; June Kinoshita; Gordon Shepherd; Perry Miller; Elizabeth Wu; Gwendolyn T Wong; Nian Liu; Chiquito Crasto; Thomas Morse; Susie Stephens; Kei-Hoi Cheung
Journal:  BMC Bioinformatics       Date:  2007-05-09       Impact factor: 3.169

Review 6.  Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL.

Authors:  Mikel Egaña Aranguren; Sean Bechhofer; Phillip Lord; Ulrike Sattler; Robert Stevens
Journal:  BMC Bioinformatics       Date:  2007-02-20       Impact factor: 3.169

Review 7.  Experiences from the anatomy track in the ontology alignment evaluation initiative.

Authors:  Zlatan Dragisic; Valentina Ivanova; Huanyu Li; Patrick Lambrix
Journal:  J Biomed Semantics       Date:  2017-12-04

8.  GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations.

Authors:  Qingwei Xu; Yixiang Shi; Qiang Lu; Guoqing Zhang; Qingming Luo; Yixue Li
Journal:  BMC Bioinformatics       Date:  2008       Impact factor: 3.169

9.  Simplified ontologies allowing comparison of developmental mammalian gene expression.

Authors:  Adele Kruger; Oliver Hofmann; Piero Carninci; Yoshihide Hayashizaki; Winston Hide
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583
  9 in total

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