Literature DB >> 15506769

Structural characterization of modular supramolecular architectures in solution.

David M Tiede1, Ruitian Zhang, Lin X Chen, Lianhe Yu, Jonathan S Lindsey.   

Abstract

Structures of modular supramolecular architectures consisting of a hexameric, diphenylethyne-linked porphyrin macrocyclic array and the corresponding host-guest complex formed by inclusion of a tripyridyl guest molecule were characterized in solution using high-angle X-ray scattering. Scattering measurements made to 6 A resolution coupled with pair distance function (PDF) analyses demonstrated that (1) the porphyrin architectures are not rigid but are distributed across a conformational ensemble with a mean diameter that is 1.5 A shorter than the diameter of a symmetric, energy-minimized model structure, (2) the conformational envelope has limits of 3 A positional dispersion and full rotational freedom for all six porphyrin groups, and (3) insertion of the tripyridyl guest molecule expands the diameter of the host conformer by 0.6 A and decreases the configurational dispersion by approximately 2-fold. These results validate the molecular design, provide a new measure of conformational ensembles in solution that cannot be obtained by other techniques, and establish a structural basis for understanding the photophysical and guest-hosting functions of the hexameric porphyrin architectures in liquids.

Entities:  

Year:  2004        PMID: 15506769     DOI: 10.1021/ja048209q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  X-ray diffraction "fingerprinting" of DNA structure in solution for quantitative evaluation of molecular dynamics simulation.

Authors:  Xiaobing Zuo; Guanglei Cui; Kenneth M Merz; Ligang Zhang; Frederick D Lewis; David M Tiede
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-27       Impact factor: 11.205

2.  Molecular crowding inhibits intramolecular breathing motions in proteins.

Authors:  Lee Makowski; Diane J Rodi; Suneeta Mandava; David D L Minh; David B Gore; Robert F Fischetti
Journal:  J Mol Biol       Date:  2007-08-17       Impact factor: 5.469

Review 3.  X-ray scattering combined with coordinate-based analyses for applications in natural and artificial photosynthesis.

Authors:  David M Tiede; Kristy L Mardis; Xiaobing Zuo
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

Review 4.  Supramolecular coordination: self-assembly of finite two- and three-dimensional ensembles.

Authors:  Rajesh Chakrabarty; Partha Sarathi Mukherjee; Peter J Stang
Journal:  Chem Rev       Date:  2011-08-24       Impact factor: 60.622

5.  The effects of thermal disorder on the solution-scattering profiles of macromolecules.

Authors:  Peter B Moore
Journal:  Biophys J       Date:  2014-04-01       Impact factor: 4.033

6.  Coordination-driven face-directed self-assembly of trigonal prisms. Face-based conformational chirality.

Authors:  Douglas C Caskey; Takuya Yamamoto; Chris Addicott; Richard K Shoemaker; Jaroslav Vacek; Adam M Hawkridge; David C Muddiman; Gregg S Kottas; Josef Michl; Peter J Stang
Journal:  J Am Chem Soc       Date:  2008-05-21       Impact factor: 15.419

7.  From solvolysis to self-assembly.

Authors:  Peter J Stang
Journal:  J Org Chem       Date:  2009-01-02       Impact factor: 4.354

8.  Solution-state conformational ensemble of a hexameric porphyrin array characterized using molecular dynamics and X-ray scattering.

Authors:  Kristy L Mardis; Heather M Sutton; Xiaobing Zuo; Jonathan S Lindsey; David M Tiede
Journal:  J Phys Chem A       Date:  2009-03-19       Impact factor: 2.781

9.  Vernier-templated synthesis, crystal structure, and supramolecular chemistry of a 12-porphyrin nanoring.

Authors:  Dmitry V Kondratuk; Johannes K Sprafke; Melanie C O'Sullivan; Luis M A Perdigao; Alex Saywell; Marc Malfois; James N O'Shea; Peter H Beton; Amber L Thompson; Harry L Anderson
Journal:  Chemistry       Date:  2014-08-25       Impact factor: 5.236

10.  Making hybrid [n]-rotaxanes as supramolecular arrays of molecular electron spin qubits.

Authors:  Antonio Fernandez; Jesus Ferrando-Soria; Eufemio Moreno Pineda; Floriana Tuna; Iñigo J Vitorica-Yrezabal; Christiane Knappke; Jakub Ujma; Christopher A Muryn; Grigore A Timco; Perdita E Barran; Arzhang Ardavan; Richard E P Winpenny
Journal:  Nat Commun       Date:  2016-01-08       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.