| Literature DB >> 15504263 |
Guodong Liang1, Qiuxia Chen, Jianguo Xu, Yufei Liu, Wilina Lim, J S M Peiris, Larry J Anderson, Li Ruan, Hui Li, Biao Kan, Biao Di, Peter Cheng, K H Chan, Dean D Erdman, Shuyan Gu, Xinge Yan, Weili Liang, Duanhua Zhou, Lia Haynes, Shumin Duan, Xin Zhang, Han Zheng, Yang Gao, Suxiang Tong, Dexin Li, Ling Fang, Pengzhe Qin, Wenbo Xu.
Abstract
Four cases of severe acute respiratory syndrome (SARS) that occurred from December 16, 2003, to January 8, 2004, in the city of Guangzhou, Guangdong Province, China, were investigated. Clinical specimens collected from these patients were tested by provincial and national laboratories in China as well as members of the World Health Organization SARS Reference and Verification Laboratory Network in a collaborative effort to identify and confirm SARS-associated coronavirus (SARS-CoV) infection. Although SARS-CoV was not isolated from any patient, specimens from three patients were positive for viral RNA by reverse transcription-polymerase chain reaction assay, and all patients had detectable rises in SARS-CoV-specific antibodies. This study shows the effectiveness of a collaborative, multilaboratory response to diagnose SARS.Entities:
Mesh:
Substances:
Year: 2004 PMID: 15504263 PMCID: PMC3323270 DOI: 10.3201/eid1010.040445
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
WHO network laboratories that tested specimens from the four SARS patients in Guangdong Province, Chinaa
| Laboratory codeb | SARS-CoV | OC43/229E | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Real-time RT-PCR | RT-PCR Sequencing | EIA | IFA | Neutralization | Isolation | RT-PCR | EIA | IFA | Neutralization | |
| A | √ | √ | √ | √ | √ | |||||
| B | √ | √ | √ | √ | √ | |||||
| C | √ | √ | √ | √ | √ | √ | √ | |||
| D | √ | √ | √ | √ | √ | √ | √ | √ | ||
aWHO, World Health Organization; SARS, severe acute respiratory syndrome; CoV, coronavirus; RT-PCR, reverse transcription–polymerase chain reaction; EIA, enzyme immuno assay; IFA, immunofluorescence assay. bLaboratory A, Center for Disease Control and Prevention of Guangdong Province and Center for Disease Control and Prevention of Guangzhou; laboratory B, Institute for Viral Disease Control and Prevention and Institute for Communicable Infectious Disease, Chinese Center for Disease Control and Prevention; laboratory C, Government Virus Unit and Department of Microbiology, Queen Mary Hospital; laboratory D, U.S. Centers for Disease Control and Prevention.
SARS-CoV EIA, IFA, and neutralization test results for the four SARS patients in Guangdong Province, Chinaa
| Patient | No. daysb | EIA | IFA | Neutralization | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| A | B | Cc | D | A | C | B | Cd | D | ||
| 1 (onset 12/16/2003) | 6 | 4 | 160 | + | 400 | 10 | 25 | 16 | 10 | 20 |
| 7 | 16 | 320 | + | 1,600 | 80 | 200 | ||||
| 8 | 32 | 640 | 160 | |||||||
| 9 | 128 | 1,280 | ||||||||
| 10 | 128 | 1,280 | 160 | |||||||
| 11 | 128 | 1,280 | + | 6,400 | 160 | 200 | ||||
| 12 | 128 | 1,280 | 64 | 160 | ||||||
| 13 | 128 | 1,280 | ||||||||
| 15 | 64 | + | 6,400 | 400 | ||||||
| 22 | 64 | 6,400 | 160 | |||||||
| 2 (onset 12/26/2003) | 6 | 10 | 10 | <8 | 40 | |||||
| 7 | 4 | 20 | + | 80 | 100 | |||||
| 8 | 8 | 40 | 1,600 | 160 | 160 | |||||
| 9 | 80 | 160 | ||||||||
| 10 | 80 | 160 | ||||||||
| 11 | 16 | 6,400 | 160 | |||||||
| 17 | + | 6,400 | 1,600 | 16 | 160 | |||||
| 19 | 16 | |||||||||
| 21 | 6,400 | 160 | ||||||||
| 22 | 16 | |||||||||
| 3 (onset 12/30/2003) | 8 | 16 | ||||||||
| 9 | 160 | 6,400 | 20 | 160 | ||||||
| 10 | 16 | 320 | + | 80 | 200 | 80 | ||||
| 11 | 64 | 320 | 320 | |||||||
| 13 | 16 | + | 6,400 | 400 | 32 | 160 | ||||
| 17 | 32 | 6,400 | 160 | |||||||
| 4 (onset 1/8/2004) | 8 | – | 10 | <25 | <10 | |||||
| 11 | 10 | |||||||||
| 15 | 80 | 160 | 1,600 | 320 | 1,600 | 80 | ||||
| 17 | 160 | |||||||||
| 18 | 1,600 | 20 | ||||||||
| 21 | 160 | 1,600 | 80 | |||||||
aSARS-CoV, severe acute respiratory syndrome–associated coronavirus; EIA, enzyme immuno assay; IFA, immunofluorescence assay; +, positive, –, negative. Where no value appears, the test was not performed. bNumber of days the specimen was collected after symptom onset. cSpecimens tested by Government Virus Unit, Hong Kong Special Administrative Region and Department of Microbiology, Queen Mary Hospital. dSpecimens tested by Government Virus Unit, Hong Kong Special Administrative Region, with a subset tested by Department of Microbiology, Queen Mary Hospital.
SARS-CoV, OC43, and 229E neutralization test results for the four SARS cases in Guangdong Province, Chinaa
| Patient | No. daysb | SARS-CoV | OC43c | 229Ec | ||
|---|---|---|---|---|---|---|
| B | C | D | D | D | ||
| 1 (onset 12/16/2003) | 6 | 16 | 10 | 20 | 20 | <20 |
| 12 | 64 | 160 | ||||
| 22 | 160 | 20 | <20 | |||
| 2 (onset 12/26/2003) | 6 | <8 | 40 | |||
| 8 | 160 | 20 | <20 | |||
| 17 | 16 | 160 | ||||
| 21 | 160 | 20 | <20 | |||
| 3 (onset 12/30/2003) | 9 | 160 | 40 | <20 | ||
| 10 | 80 | |||||
| 13 | 32 | 160 | ||||
| 17 | 160 | 40 | <20 | |||
| 4 (onset 1/8/2004) | 8 | <10 | ||||
| 15 | 80 | 20 | <20 | |||
| 18 | 20 | |||||
| 21 | 80 | 20 | <20 | |||
aSARS-CoV, severe acute respiratory syndrome–associated coronavirus. When no values appear, the test was not performed. bNumber of days the specimen was collected after symptom onset. cOC43 and 229E neutralization tests were conducted by laboratory D only.
SARS-CoV real-time RT-PCR test results for the four SARS patients in Guangdong Province, Chinaa
| Patient | No. daysb | Specimen type | Real-time RT-PCR | |||
|---|---|---|---|---|---|---|
| A | B | Cc | D | |||
| 1 (onset 12/16/2003) | 6 | Throat swab | + | + | + | + |
| 7 | Stool | – | – | – | – | |
| Sputum | – | – | – | – | ||
| 8 | Throat swab | + | – | – | – | |
| Stool | – | – | – | – | ||
| Serum | – | – | – | – | ||
| 9 | Throat swab | – | – | – | – | |
| Stool | – | – | – | – | ||
| Serum | – | – | – | – | ||
| Sputum | – | – | – | – | ||
| Urine | – | – | – | – | ||
| 10 | Throat swab | + | – | |||
| Stool | – | – | ||||
| Serum | – | – | ||||
| Urine | – | – | ||||
| 11 | Throat swab | – | – | – | – | |
| Stool | – | – | – | – | ||
| Serum | – | – | – | – | ||
| Sputum | – | – | – | – | ||
| Urine | – | – | – | – | ||
| 12 | Throat swab | – | – | – | ||
| Stool | – | – | – | |||
| Serum | – | – | – | |||
| Urine | – | – | – | |||
| 13 | Throat swab | – | – | – | ||
| Stool | – | – | – | |||
| Serum | – | – | – | |||
| Urine | – | – | – | |||
| 14 | Sputum | – | – | |||
| 15 | Throat swab | – | – | |||
| Stool | – | – | ||||
| 2 (onset 12/26/2003) | 6 | Throat swab | – | + | ||
| 7 | Throat swab | – | – | – | ||
| 8 | Throat swab | + | + | |||
| 9 | Throat swab | – | ||||
| 10 | Throat swab | – | – | |||
| 3 (onset 12/30/2003) | 9 | Throat swab | – | – | – | |
| Stool | – | – | – | |||
| Urine | – | – | – | |||
| 10 | Throat swab | – | – | |||
| 11 | Throat swab | – | ||||
| 4 (onset 1/8/2004) | 12 | Stool | – | – | + | – |
| 15 | Throat swab | – | – | – | – | |
| 16 | Stool | – | – | – | ||
aSARS-CoV, severe acute respiratory syndrome–associated coronavirus; RT-PCR, reverse transcription–polymerase chain reaction; +, positive, –, negative. Where no value appears, the test was not performed. bNumber of days the specimen was collected after symptom onset. cSpecimens tested by Government Virus Unit, Hong Kong Special Administrative Region, with a subset tested by Department of Microbiology, Queen Mary Hospital.